DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and abcc3

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_001107301.1 Gene:abcc3 / 100135090 XenbaseID:XB-GENE-1003737 Length:1531 Species:Xenopus tropicalis


Alignment Length:1422 Identity:482/1422 - (33%)
Similarity:728/1422 - (51%) Gaps:222/1422 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 PFTKANFFSQWSFWWMRDLFKRGLQGPLTDEELYQHRKTLDSERVTNKFAELWE----------- 67
            |.:.|.|.|:.:|||...:...|.:.||.|::|:...:...|..|.....:.||           
 Frog   208 PESDAGFLSRLTFWWFTKMAILGYKRPLEDKDLWSLNEDDTSNVVVTNLIKEWEKEKSNLAQMQV 272

  Fly    68 -------------------------DELKRSNPSVVRMILRAYGKIFVPMGLAFSISETICKSLM 107
                                     |..|...||.::::||.:|..|: :|..|.:.:.:...:.
 Frog   273 SYSKKPEAVLNHTDEKAYESDVLIVDNKKPKEPSFLKVLLRTFGPYFL-IGSFFKLFQDLLSFVN 336

  Fly   108 PLFLGGLVGYFATNQTDISENTAYLYAMGIVICMLVPVITFHPFIFYIFQVGTKLRLALSGLIYR 172
            |..|..|:.:.  ...|......:..|:.:.:..||..:..|....|.|..|.:||.|::|:|||
 Frog   337 PQLLSILITFI--KNKDAPSWWGFCIAVLMFLTSLVQTLILHQHFQYCFVTGMRLRSAITGIIYR 399

  Fly   173 KVLQVSKSSSNDGLRGRAINILSNDLGRFDVALCFLHDTWKGPMESILIGFLMYREIGISAVIGV 237
            |.|.::.|:......|..:|::|.|..||.....||:..|..|::..|..:.:::.:|.|.:.||
 Frog   400 KSLVITNSAKRSSTVGEVVNLMSVDAQRFQDLTTFLNMLWSAPLQICLALYFLWQALGPSVLAGV 464

  Fly   238 SFMLSFIPLQAWAAKKAAYYRQMTAERTDMRVKLMNEIIQGIQVIKMYAWEKSFARVIAEVRLKE 302
            :.|:..||:.|:.|.|...::....:..|.|:||||||:.||:|:|:||||.|||:.:.|:|.||
 Frog   465 AVMVLLIPINAFIAMKTRAFQVEQMQYKDSRIKLMNEILNGIKVLKLYAWEPSFAQKVLEIRNKE 529

  Fly   303 VKAIRGTAYIHAALGCTSMISPLSVFL-ALCSYVYLGDP--LTAQKVYTVSSYFNMLNDSMVTFW 364
            :..::..||::|........:|..|.| ....||.:.:.  |.|:|.:...|.||:|...: ...
 Frog   530 LNILKKAAYLNALSTFAWTSAPFLVALTTFAVYVTVDEKNILDAEKAFVSLSLFNILRFPL-NML 593

  Fly   365 PMSITFIAEALVSAKRCKDFLLDGDKAEVPINLEANQQTGKNKRKISKKDKQKNVELNGSLLSNG 429
            |..|:.:|:|.||.||.::||.:.:       |:.|..|         |||    .|.|:.::  
 Frog   594 PQVISNLAQASVSIKRIQNFLANDE-------LDLNAVT---------KDK----TLPGNAIT-- 636

  Fly   430 QVHHNRLRDYDPEATKKCVVLKNVSASWDTSDGHANCAIEDFSTDIKDQTLAAVVGPVGAGKSSF 494
             ||                   |.:.||..:.|   ..:::.:..:...:|.||||.||.||||.
 Frog   637 -VH-------------------NGTFSWAKNGG---AILQNINLLVPSGSLVAVVGQVGCGKSSL 678

  Fly   495 LNVLLGEVGIDKGEAMVHGKISYASQESWVFEGTIRDNIVFVEDYNERRYKKVVKVCGLERDMEL 559
            ::.||||:..::||..|.|.::|..|::|:...|::|||:|....||:.||||::.|.|..|:|:
 Frog   679 VSALLGEMEKEEGEVSVRGSVAYVPQQAWIQNCTLKDNILFGRAANEKNYKKVLEACALVTDLEV 743

  Fly   560 LPRGDLTVVGERGVSLSGGQKARVSLARAVYRKADIYLLDDPLSAVDTHVGKHIFDRCI--RDFL 622
            ||.||.|.:||:|::||||||.||||||||:..||:|||||||||||.||.|||||..|  ...|
 Frog   744 LPGGDQTEIGEKGINLSGGQKQRVSLARAVFSNADVYLLDDPLSAVDAHVAKHIFDNVIGPDGLL 808

  Fly   623 SNKIRILVTHQVQYLFDVEHLLLMGSGKIMAQGSYQELQRS--------RQFQFLEQTQHDESGI 679
            ..|.|:||||.:.:|..|:|::::..|::...||||||.:.        |.:.|.::.:.::..|
 Frog   809 RGKTRVLVTHGISFLPQVDHIVVLVDGRVTEMGSYQELLKQNGAFSEFLRNYAFDDEVEEEDITI 873

  Fly   680 D--------THSVSSYLSRSDSEKSMEHQHNQLLR------------------------PDEHV- 711
            .        ..::|::...:|:|........:.:|                        |.|:: 
 Frog   874 PDEEEVLLAEETLSTHTDLADNEPVANEARKKFIRQISILSDGEPSHAMSTRRRFTEKKPSENLV 938

  Fly   712 ------EDVNQEQQT-VGSIKMHVYASYIKALDSTFLLGIVISLFV-----CARIMLTGVDYFLS 764
                  |.:.|.:.| .|.:||.|:..|:||      :|:.||:|:     |......|.:.:||
 Frog   939 AKQPPTEKLIQTETTETGRVKMTVFWQYMKA------VGLAISVFICFLYSCQNAAAIGANVWLS 997

  Fly   765 RWVIWEEQIAVNRTTTLLNETDTTIANDTLPINATDPYIAPLLASDIQAGIRQELVL----FYAT 825
            .|.          ...::|:|.   .|..:.:..   |.|        .||.|.|::    |...
 Frog   998 DWT----------NEPVINQTQ---QNTQMRVGV---YAA--------LGILQGLLVMTSSFSLA 1038

  Fly   826 ILGATLIVYLIRTFGFFKMCLRISLHLHDRLFRGITRASMYFFNTNSSGRILNRFSKDIRTVDTD 890
            |.|                 :..:..||..|..........|::|...|||:|||||||..:|..
 Frog  1039 IAG-----------------IGAARKLHSALLDNKMHTPQSFYDTTPIGRIINRFSKDIYVIDEV 1086

  Fly   891 LPHTLLDCLA-FIIDVSGVVIIVAIANYW--LLIPAAIIGVILGMIRYLYVNTSRSVKRLESISR 952
            :|.|:|..|| |...:|.:::|||....:  ::||.||..:   .::..||.|||.:|||||:||
 Frog  1087 IPGTILMFLATFFTSLSTMIVIVASTPLFAVVIIPLAIAYI---FVQRFYVATSRQLKRLESVSR 1148

  Fly   953 SPVFSLTNQTFQGLTTIRALQAQSALEQEFHEYQNTNTSAWFLFLSCTRAFALWSDVL------C 1011
            ||::|..::|..|.:.|||...|::.........:.|..:::..:...|    |..|.      |
 Frog  1149 SPIYSHFSETITGASIIRAYGRQNSFIVLSDNKVDENQKSYYPGIVSNR----WLGVRVEFVGNC 1209

  Fly  1012 IVYMTAVTFSFLLL-KDEFDSGDVGLAILHSTTMTGMCQWGMRQTAELENQMTSVERVLEYTEQP 1075
            :|...|:   |.:| ::....|.|||::.::..:|....|.:|.|::||..:.:||||.||.|..
 Frog  1210 VVLFAAL---FAVLGREHLSPGLVGLSVSYALQVTMSLNWMVRMTSDLETNIVAVERVKEYAENE 1271

  Fly  1076 SEALLETP---EKFKPKSEWPSKGRIEFINFKLRYSPKEAPVLKDLNFTIEPREKIGIVGRTGAG 1137
            :||    |   |..||..:|||||.:|..|:.:||......|||:||..:...||:|||||||||
 Frog  1272 TEA----PWHIEDTKPPEDWPSKGEVELSNYSVRYRAGLDLVLKNLNLKVNGGEKVGIVGRTGAG 1332

  Fly  1138 KSSIIQSIFR-LACNEGMIRIDDVDIEHIGLHDLRSQVSIIPQDPVLFSGTLRYNLDPMDERSDE 1201
            |||:...:|| |...||:::||:|:|..|||.||||:::||||||||||||||.||||.::.||:
 Frog  1333 KSSMTLCLFRILEPAEGIVKIDNVNISEIGLQDLRSRLTIIPQDPVLFSGTLRMNLDPFNKYSDD 1397

  Fly  1202 EMWKALGDVELRSYVSTLIGGLNCRMYDGGSNFSVGQRQLVCLARAILRHNKILIMDEATANVDP 1266
            |:||||....|:.:|:.....|.....:||.|.|||||||||||||:||..:|||:|||||.:|.
 Frog  1398 EIWKALELSNLKKFVAGQPSQLEYECSEGGENLSVGQRQLVCLARALLRKTRILILDEATAAIDL 1462

  Fly  1267 ETDKLIQQTIRSKFAHCTVLTIAHRLHTVMDSDRVLVMDAGEVRELGHPYELLQRTG 1323
            |||.|||.|||::|..||||||||||:|:||..||||:|.|.:.|...|..|:...|
 Frog  1463 ETDDLIQMTIRTQFEDCTVLTIAHRLNTIMDYTRVLVLDKGRIAEFDTPTNLIALKG 1519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 482/1422 (34%)
ABC_membrane 94..360 CDD:294371 81/268 (30%)
ABCC_MRP_domain1 448..650 CDD:213217 94/203 (46%)
ABC_membrane 821..1046 CDD:294371 67/238 (28%)
ABCC_MRP_domain2 1096..1315 CDD:213211 125/219 (57%)
abcc3NP_001107301.1 MRP_assoc_pro 7..1530 CDD:188098 482/1422 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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