DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and abcc1

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:XP_001341895.3 Gene:abcc1 / 100002010 ZFINID:ZDB-GENE-050517-15 Length:1518 Species:Danio rerio


Alignment Length:1436 Identity:464/1436 - (32%)
Similarity:725/1436 - (50%) Gaps:230/1436 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KVVRPKNPFTK--ANFFSQWSFWWMRDLFKRGLQGPLTDEELYQHRKTLDSERVTNKFAELWEDE 69
            :||:..||..:  |:|.|:.:|||:..|..:|.:.||.:::|:.......||||..:....|:.|
Zfish   200 EVVKDSNPCPESGASFLSKITFWWITGLMVKGYKRPLEEKDLWSLNNEDKSERVVPQLVRRWDQE 264

  Fly    70 L--------------KRS--------------------------NPSVVRMILRAYGKIFVPMGL 94
            .              |||                          .||:...:.|.:|..|:...|
Zfish   265 CVKVKRPVDKTLYSPKRSTRGEKKDGQPVEESEILLAKALQKTGEPSLFFALCRTFGPYFLVSSL 329

  Fly    95 AFSISETICKSLMPLFLGGLVGYFATNQTDISENTAYLYAMGIVICMLVPVITFHPFIFYIFQVG 159
             :.|...:...:.|..|..|:.:  .|.:.......|.|...:.:|..:..:....:....|..|
Zfish   330 -YKIIHDVLMFVGPEILRLLILF--VNDSSAPTWHGYFYTALLFVCTCLQTLILQKYFHVCFVTG 391

  Fly   160 TKLRLALSGLIYRKVLQVSKSSSNDGLRGRAINILSNDLGRFDVALCFLHDTWKGPMESILIGFL 224
            .:||.|:.|.:|||.|.::.::......|..:|::|.|..||...:.:::..|..|::.||..:.
Zfish   392 MRLRTAIVGAVYRKALVITNAARRTSTVGEIVNLMSVDAQRFMDLITYINMIWSAPLQVILALYF 456

  Fly   225 MYREIGISAVIGVSFMLSFIPLQAWAAKKAAYYRQMTAERTDMRVKLMNEIIQGIQVIKMYAWEK 289
            :::.:|.|.:.||:.|:..:||.|..|.|...|:....:..|.|:|||||::.||:|:|:||||.
Zfish   457 LWQNLGASVLAGVAVMVLMVPLNAVIAMKTKTYQVAQMKSKDNRIKLMNEVLNGIKVLKLYAWEL 521

  Fly   290 SFARVIAEVRLKEVKAIRGTAYIHAALGCTSMISPLSVFLALCSYVYLGDP---LTAQKVYTVSS 351
            :|...::.:|..|::.::..||:.|....|.:.:|..|.|:..:...|.|.   |.|||.:...:
Zfish   522 AFKGKVSAIRESELRVLKKMAYLGAISTFTWVCAPFLVALSTFAVYVLVDENNILDAQKAFVSLA 586

  Fly   352 YFNMLNDSMVTFWPMSITFIAEALVSAKRCKDFL----LDGDKAEVPINLEANQQTGKNKRKISK 412
            .||:|...: ...||.|:.:.:|.||.:|.:.||    ||.|..|.|                  
Zfish   587 LFNILRFPL-NMLPMVISSMVQASVSMQRLRVFLSHEELDDDNVERP------------------ 632

  Fly   413 KDKQKNVELNGSLLSNGQVHHNRLRDYDPEATKKCVVLKNVSASWDTSDGHANCAIEDFSTDIKD 477
                   .::|:                |::.:    :.:.:.||...|..   .::..:..|.:
Zfish   633 -------AISGT----------------PDSIR----IADGAFSWSKDDPP---TLKRINVSIPE 667

  Fly   478 QTLAAVVGPVGAGKSSFLNVLLGEVGIDKGEAMVHGKISYASQESWVFEGTIRDNIVFVEDYNER 542
            ..|.||||.||:||||.|:.||||:...:|...:.|.::|..|::|:...|::|||:|..:..:.
Zfish   668 GALVAVVGHVGSGKSSLLSALLGEMHKQEGSVSIKGSVAYVPQQAWIQNATLKDNILFGRETKDS 732

  Fly   543 RYKKVVKVCGLERDMELLPRGDLTVVGERGVSLSGGQKARVSLARAVYRKADIYLLDDPLSAVDT 607
            .|:|||:.|.|..|:|:||.||.|.:||:||:||||||.|||:|||||....:|||||||||||.
Zfish   733 WYQKVVEACALLPDLEILPGGDTTEIGEKGVNLSGGQKQRVSVARAVYCNCSVYLLDDPLSAVDA 797

  Fly   608 HVGKHIFDRCI--RDFLSNKIRILVTHQVQYLFDVEHLLLMGSGKIMAQGSYQEL--------QR 662
            |||||||::.|  :..|..:.|:||||.:.:|...:.:|:|..|:|...|||.||        :.
Zfish   798 HVGKHIFEKVIGPQGLLQGRTRVLVTHGLSFLPQADLILVMVDGEITEMGSYTELLGRQGAFAEF 862

  Fly   663 SRQFQFLEQTQHDES--------GIDTHSVSSYLSRSD----------------------SEKSM 697
            .|.:...||.:.:||        |::....::.|.:|.                      :.|:.
Zfish   863 LRTYTNTEQEEGEESLGDAVPRKGLENGGPAALLRQSQISLNATGAGKTTQKTEANDDAAATKTK 927

  Fly   698 EHQHNQLLRPDEHVEDVNQEQQTVGSIKMHVYASYIKALDSTFLLGIVIS-----LFVCARIMLT 757
            ..:.::|...|         :...|.:|:.|:..|:||      :|:.:|     ||.|..:...
Zfish   928 SAEASRLTEAD---------KANTGRVKLSVFWEYMKA------IGLPLSIFSIFLFFCHHLSSL 977

  Fly   758 GVDYFLSRWVIWEEQIAVNRTTTLLNETDTTIANDTLPINATDPYIAPLLASDIQAGIRQELVLF 822
            |.:|:||.|                  ||..:.|:|.|                    ::|:.| 
Zfish   978 GSNYWLSLW------------------TDDPVVNNTQP--------------------KREMRL- 1003

  Fly   823 YATILGATLIVYLIRTFGFFKMCLRISL---------HLHDRLFRGITRASMYFFNTNSSGRILN 878
              .:.||..|...|..|     |..:|:         :||..:...:.|:.|.||....||.::|
Zfish  1004 --GVYGALGISQGIAVF-----CYSVSVSVGGILASRYLHQTMLYNVLRSPMSFFERTPSGNLVN 1061

  Fly   879 RFSKDIRTVDTDLPHTLLDCLAFIIDVSG--VVIIVAIANYWLLIPAAIIGVILGMIRYLYVNTS 941
            ||:|:..|:|:.:|..:...:..:.:|.|  .||::|.....::||.  :|::...::..||.:|
Zfish  1062 RFAKETDTIDSVIPSIIKMFMGSMFNVLGSCAVILIATPLVAIIIPP--LGLLYFFVQRFYVASS 1124

  Fly   942 RSVKRLESISRSPVFSLTNQTFQGLTTIRALQAQSALEQEFHEYQNTNTSAWFLFLSCTRAFALW 1006
            |.:|||||:|||||::..|:|..|.:.|||...|....:|.....:.|..|:|..:...|..|:.
Zfish  1125 RQMKRLESVSRSPVYTHFNETLLGTSVIRAFGEQQRFIKESDGRVDHNQKAYFPSIVANRWLAVR 1189

  Fly  1007 SDVL--CIVYMTAVTFSFLLLKDEFDSGDVGLAILHSTTMTGMCQWGMRQTAELENQMTSVERVL 1069
            .:.:  |||...|: |: ::.::....|.:||:|.::..:|....|.:|.::|||..:.:||||.
Zfish  1190 LEFVGNCIVTFAAL-FA-VMARNNLSPGIMGLSISYALQVTASLNWLVRMSSELETNIVAVERVK 1252

  Fly  1070 EY--TEQPSEALLETPEKFKPKSEWPSKGRIEFINFKLRYSPKEAPVLKDLNFTIEPREKIGIVG 1132
            ||  ||:.:|..||. ....|  .||:.|.||...|.|||.......:.|::..|...||:||||
Zfish  1253 EYGDTEKEAEWKLEN-SNLPP--GWPTAGHIEIHKFGLRYREDLELAICDISVNIAGGEKVGIVG 1314

  Fly  1133 RTGAGKSSIIQSIFR-LACNEGMIRIDDVDIEHIGLHDLRSQVSIIPQDPVLFSGTLRYNLDPMD 1196
            ||||||||:...:|| :...||.||||.|:|..:|||:|||:::|||||||||||:||.||||.|
Zfish  1315 RTGAGKSSLTLGLFRIIEAAEGEIRIDGVNIADLGLHELRSRITIIPQDPVLFSGSLRMNLDPFD 1379

  Fly  1197 ERSDEEMWKALGDVELRSYVSTLIGGLNCRMYDGGSNFSVGQRQLVCLARAILRHNKILIMDEAT 1261
            ..:|||:|::|....|:::||.|...||....:||.|.|:|||||||||||:||..|||::||||
Zfish  1380 GYTDEEVWRSLELAHLKTFVSGLPDKLNHECSEGGENLSLGQRQLVCLARALLRKTKILVLDEAT 1444

  Fly  1262 ANVDPETDKLIQQTIRSKFAHCTVLTIAHRLHTVMDSDRVLVMDAGEVRELGHPYELLQRTGGYL 1326
            |.||.|||.|||.|||::|..||||||||||:|:||..||||:|.|::.|...|..|:.:.|.:.
Zfish  1445 AAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVLVLDKGQMAEFDSPSNLIAKKGIFY 1509

  Fly  1327 RQLVDN 1332
            :...|:
Zfish  1510 KMAKDS 1515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 462/1431 (32%)
ABC_membrane 94..360 CDD:294371 74/268 (28%)
ABCC_MRP_domain1 448..650 CDD:213217 89/203 (44%)
ABC_membrane 821..1046 CDD:294371 67/237 (28%)
ABCC_MRP_domain2 1096..1315 CDD:213211 125/219 (57%)
abcc1XP_001341895.3 MRP_assoc_pro 7..1517 CDD:188098 464/1436 (32%)
ABC_membrane 331..595 CDD:279056 73/265 (28%)
ABCC_MRP_domain1 641..842 CDD:213217 89/207 (43%)
ABC_membrane 966..1231 CDD:279056 82/314 (26%)
ABCC_MRP_domain2 1278..1498 CDD:213211 125/219 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170585976
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG51855
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100026
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.760

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