DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn2 and RPN2

DIOPT Version :9

Sequence 1:NP_001263057.1 Gene:Rpn2 / 43449 FlyBaseID:FBgn0028692 Length:1029 Species:Drosophila melanogaster
Sequence 2:NP_012190.1 Gene:RPN2 / 854735 SGDID:S000001337 Length:945 Species:Saccharomyces cerevisiae


Alignment Length:1043 Identity:397/1043 - (38%)
Similarity:603/1043 - (57%) Gaps:128/1043 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSLTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRSFPENKLAGMVA 65
            ||||:||.:::||.|....:|.:||:.::|:||:.|.|||..:..||.|::|.:|.:.::|.::|
Yeast     1 MSLTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREMAALIA 65

  Fly    66 SKVFYHLGSFEDALTYALGAGDLFDVNARNEYTETIIAKCIDFYIAQRVEFIENPKE---ASVVD 127
            |||:|:||.:|.|:.|||.|.|.||::.::::.|||::|.|:.|:.:..:.....::   ..::|
Yeast    66 SKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIID 130

  Fly   128 ERLEGIVNRMIQRCLDDNQFRQALGIALETRRMDTFKDAIMK-------SDDVRGMLAYAYNVTM 185
            .:|..|..|||::||..::.:.|||||||..|:|..:.|:..       |::|: ::.|...:.:
Yeast   131 PKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVK-IINYLLTLAI 194

  Fly   186 SLIQNRGFRNEVLRCLVSLYRDLGVPDYVNMCQCLIFLEDPFAVAEMLDNLTRSSVETNNLMAYQ 250
            :.:.|..||:.:||.......::...||:.:.:.::.|.|.....::...|..   |.:..::.|
Yeast   195 TTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKE---ENDEGLSAQ 256

  Fly   251 IAFDLYESATQEFLGNVLQHLKNTAPIPTALPSTFKPQGTTSEDGAKSEGDKSKSDEDITEETPA 315
            |||||..||:|:.|..::..|       ||       ||                      ..||
Yeast   257 IAFDLVSSASQQLLEILVTEL-------TA-------QG----------------------YDPA 285

  Fly   316 DDKVERTIDSLNEVEKLHQKNIEKLISILSGEVSIDLQLQFLIRSNHADLQVLRGTKEAV--RVS 378
                                    |::||||..:.|....||:.:.:.|:.:|..:|.::  :.|
Yeast   286 ------------------------LLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFS 326

  Fly   379 ICHTATVIANAFMHSGTTSDQFLRDNLDWLARATNWAKLTATASLGVIHRGHEKDSLALMQSYLP 443
            :.|||..:||.|||:|||.:.|::.||.||.:|.||||.||||||||||:|:..:...:|..|||
Yeast   327 LFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLP 391

  Fly   444 KEAGPSSGYSEGGALYALGLIHANHGANIIDYL----LQQLKDAQNENV---RHGGCLGLGLAGM 501
            .... ||.:.:||:||.||||:|..|.:..|||    ::....:.:|:|   .||..||:|||.|
Yeast   392 GSRA-SSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 455

  Fly   502 GTHRQDLYEQLKFNLYQDDAVTGEAAGIAMGMVMLGSKNAQAIEDMVSYAQETQHEKILRGLAVG 566
            |:...::||.||..||.|.|.:||||.:.||:.|||:...:||.||.:|:|||||..|.||||||
Yeast   456 GSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVG 520

  Fly   567 ISLTMFSRLEEADPLVTSLSSDKDPVLRRSGMYTIAMAYNGTGSNKAIRKLLHVAVSDVNDDVRR 631
            ::|..:.|.|.||.|:|.:.:..:.:||..|.:|||:||.|||:|.|:::||||||||.||||||
Yeast   521 LALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRR 585

  Fly   632 AAVTAIGFILFRSPEQCPSVVSLLAESYNPHVRYGAAMALGIACAGTGLREAIALLEPMVKFDPV 696
            |||.|:||:|.|.....|.:|.||::|:|.|||.|.|.||||||||.||:.||.:|:|:.| |||
Yeast   586 AAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPV 649

  Fly   697 NFVRQGALIASAMILIQHTDQSCPKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNAT 761
            :||||.|:||.:|||||.|::..|:.....:.:..||:|||::.:||:||.:||||::|||||.|
Yeast   650 DFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVT 714

  Fly   762 LSLQSR-TGHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGL-NSDLKMPKMEYKSAAKP 824
            :.|::. ||..:.::|||::.|:|:||||||||.|||:||||.|||: .||..:||.:....||.
Yeast   715 IQLENADTGTLDTKSVVGLVMFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKE 779

  Fly   825 SLYAYPAPLEEKKSEEREKVATAVLSIAARQKRRENADKKEDEKMDVDEDSKEGAAVKKDEEAKA 889
            ..::||...||...:|.|||||||||..||.|.|....|||           :|           
Yeast   780 DAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKE-----------KG----------- 822

  Fly   890 DEKMVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQNPARVLRQ 954
                 .:|:.|||:.:||:||.:..|:....:.|.|::..|:|...|..:     :.|..|:|.|
Yeast   823 -----PNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYK-----VDNMTRILPQ 877

  Fly   955 QLKVLSVIDGQSYEPLKDVT-IGGIIVFQHTGKAEDQELVEPVAAFGPMNDEEKEPEP-PEPFEY 1017
            |.:.:|.|....:.|::... ..|::|.:      |:|..||||....:...:....| |.||: 
Yeast   878 QSRYISFIKDDRFVPVRKFKGNNGVVVLR------DREPKEPVALIETVRQMKDVNAPLPTPFK- 935

  Fly  1018 IED 1020
            ::|
Yeast   936 VDD 938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn2NP_001263057.1 RPN2 1..1003 CDD:227446 392/1023 (38%)
PC_rep 456..489 CDD:280095 14/39 (36%)
PC_rep 526..559 CDD:280095 17/32 (53%)
HEAT repeat 581..602 CDD:293787 6/20 (30%)
HEAT repeat 616..639 CDD:293787 18/22 (82%)
HEAT repeat 651..676 CDD:293787 15/24 (63%)
PC_rep 666..701 CDD:280095 22/34 (65%)
RPN2NP_012190.1 RPN2 1..945 CDD:227446 397/1043 (38%)
HEAT repeat 533..557 CDD:293787 8/23 (35%)
HEAT repeat 567..595 CDD:293787 21/27 (78%)
HEAT repeat 601..631 CDD:293787 17/29 (59%)
HEAT repeat 636..662 CDD:293787 15/26 (58%)
HEAT repeat 675..706 CDD:293787 12/30 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346173
Domainoid 1 1.000 209 1.000 Domainoid score I513
eggNOG 1 0.900 - - E1_COG5116
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2100
Inparanoid 1 1.050 586 1.000 Inparanoid score I142
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53911
OrthoFinder 1 1.000 - - FOG0004235
OrthoInspector 1 1.000 - - oto98958
orthoMCL 1 0.900 - - OOG6_101410
Panther 1 1.100 - - LDO PTHR10943
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1203
SonicParanoid 1 1.000 - - X2978
TreeFam 1 0.960 - -
1514.790

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