DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpn2 and rpn-2

DIOPT Version :9

Sequence 1:NP_001263057.1 Gene:Rpn2 / 43449 FlyBaseID:FBgn0028692 Length:1029 Species:Drosophila melanogaster
Sequence 2:NP_498346.2 Gene:rpn-2 / 175877 WormBaseID:WBGene00004459 Length:965 Species:Caenorhabditis elegans


Alignment Length:1036 Identity:362/1036 - (34%)
Similarity:562/1036 - (54%) Gaps:115/1036 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TSAAGIISLLDEPMPDL--KVFALKKLD--NIVDEFWPEISESIEKIEMLHEDRSFPENKLAGMV 64
            ::||..|.:|:.|...:  ||..||..:  :::...|.|:::::..:|.|.::.:|||:..|.::
 Worm    16 SNAAAFIRVLESPKSAVTDKVLVLKAFNDWDVLVNTWFEVADALPAVEQLLDNNTFPEHSSAALL 80

  Fly    65 ASKVFYHLGSFEDALTYALGAGDLFDVNARN-------EYTETIIAKCIDFYIAQRVEFIENPKE 122
            .|||::.|..:|.||.:|| .||...|.|..       ||...||...||.|...       .|:
 Worm    81 VSKVYFCLEQYERALEFAL-RGDFNVVPATRTGLGNDAEYVNKIIETAIDTYKTL-------SKQ 137

  Fly   123 ASVVDERLEGIVNRMIQRCLDDNQFRQALGIALETRRMDTFKDAI--MKSD-DVRGM--LAYAYN 182
            .|.:.::|..:::|::.|.||..:....:.:..||..:.....||  |.:| .::..  |....|
 Worm   138 GSGIPQKLRDLIDRIVARNLDKREIWFVISLGFETTNLAMIDRAISAMPADLTIKNQTTLVETLN 202

  Fly   183 VTMSLIQNRGFRNEVLRCLVSLYRDLGVPDYVNMCQCLIFLEDPFAVAEMLDNLTRSSVETNNLM 247
            ..::...:|.||.:|:..::..|.....||...:|:|.:..::..|.|:.:.:|...|:.|.   
 Worm   203 RVVNGAFDRSFRFQVIDTVIKTYLKCPSPDMSKICECYVLTDNAEAAADTITSLIAKSLSTR--- 264

  Fly   248 AYQIAFDLYESATQEFLGNVLQHLKNTAPIPTALPSTFKPQGTTSEDGAKSEGDKSKSDEDITEE 312
            ||||||||||:|:|.||..||:..:                                 .:|..:|
 Worm   265 AYQIAFDLYETASQGFLDRVLKRFQ---------------------------------QQDARDE 296

  Fly   313 TPADDKVERTIDSLNEVEKLHQKNIEKLISILSGEVSIDLQLQFLIRSNHADLQVLRGTKEAVRV 377
                                  |::||:.|||.|..::...|.|.:|.||.|..::...||.:|.
 Worm   297 ----------------------KSMEKIHSILKGHETVKAYLDFFVRHNHTDSVLMEEIKENIRT 339

  Fly   378 SICHTATVIANAFMHSGTTSDQFLRDNLDWLARATNWAKLTATASLGVIHRGHEKDSLALMQSYL 442
            :..|.|.:|:|..|..|||.|.|||:||:|:::||||.|..|.||||:||.|.|..::.:::.||
 Worm   340 ASAHNALLISNGLMQYGTTCDDFLRNNLNWVSKATNWNKFNAVASLGLIHHGQESSAMKVLEPYL 404

  Fly   443 PKEAGPSSGYSEGGALYALGLIHANHG-ANIIDYLLQQLKDAQNENVRHGGCLGLGLAGMGTHRQ 506
            |||:....|:.||||:.|.|||||.|| |..:..|.|.||.|:||.||||.|||.|:||:|:...
 Worm   405 PKESVEGFGFKEGGAMLAYGLIHAKHGDATAMSTLAQWLKTAENEPVRHGACLGFGVAGLGSSSV 469

  Fly   507 DLYEQLKFNLYQDDAVTGEAAGIAMGMVMLGSKNAQAIEDMVSYAQETQHEKILRGLAVGISLTM 571
            ..||:::..|.:|:||:||:||||||::|.|..|.:...::..|..:|||:|..||:..|::...
 Worm   470 SNYEKVREVLQRDEAVSGESAGIAMGLIMAGHLNQEVFNELKQYTVDTQHDKTQRGIRTGLACAA 534

  Fly   572 FSRLEEADPLV-TSLSSDKDPVLRRSGMYTIAMAYNGTGSNKAIRKLLHVAVSDVNDDVRRAAVT 635
            |....:|:|.: .::.:..:|:||.:|:..::|||.||||...:|:||....:|.|.||:|.|..
 Worm   535 FGLQGDAEPYIKEAIGAKSNPMLRSTGICMLSMAYAGTGSPDVVRRLLEKVATDPNLDVKRYATI 599

  Fly   636 AIGFILFRSPEQCPSVVSLLAESYNPHVRYGAAMALGIACAGTGLREAIALLEPMVKFDPVNFVR 700
            .|||:|.:.|..|.|.|::|.|.:|.||||||||||||||||||..|||||:|||:. |...|||
 Worm   600 GIGFVLSKDPSTCLSYVAMLTEHFNGHVRYGAAMALGIACAGTGNMEAIALIEPMIS-DKEGFVR 663

  Fly   701 QGALIASAMILIQHTDQSCPKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNATLSLQ 765
            :|||::.|:|:.|.||.:|||...||:...:.|..|:||.:.|:|||:|||::|.||:||.:::|
 Worm   664 KGALLSLALIMCQQTDYTCPKVNGFRKQLLKKIGEKNEDSLVKFGAIIAQGLLDIGGQNAAVTMQ 728

  Fly   766 SRTGHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPSLYAYP 830
            :.....::.::|||:.|...|:|..:...::||..|:|::.:|.:||:|.::|...|....:|||
 Worm   729 NSDKQPDMGSMVGMMCFLHGWFWHSMHFFIALAAKPSCLVMMNENLKIPVLDYICHANSQKFAYP 793

  Fly   831 APLEEKKSEEREKVATAVLSIAARQKRRENADKK---EDEKMDVDEDSKEGAAVKKDEEAKADEK 892
            ...|.||.::.:|:.|.||||..    ::||.||   |::|      .:|.||......|.....
 Worm   794 PRAESKKDKDVKKIETVVLSITG----KKNASKKLIAEEKK------RREAAASASSAAAAPSSS 848

  Fly   893 MVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQNPARVLRQQLK 957
            ..:...|..:|||.:..:..|        |:|:|..|||.|....       |||||||:..|.:
 Worm   849 STSGTAPAAEDEKMEVDQPGK--------SKKEKAPEKDTKPLHR-------LQNPARVIPAQRQ 898

  Fly   958 VLSVIDGQSYEPLKDVTIGGIIVFQHTGKAEDQELVEPVA--AFGPMNDEEKEPEPPEPFE 1016
            ::|:.|.::|.|:|.:..|||||.....|..:::||..|.  ...|.:....|.:|...||
 Worm   899 LISISDARAYSPMKPLYKGGIIVADRVDKEREEKLVSEVVTQVNTPASSGNTENKPHSTFE 959

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn2NP_001263057.1 RPN2 1..1003 CDD:227446 358/1021 (35%)
PC_rep 456..489 CDD:280095 18/33 (55%)
PC_rep 526..559 CDD:280095 13/32 (41%)
HEAT repeat 581..602 CDD:293787 4/21 (19%)
HEAT repeat 616..639 CDD:293787 9/22 (41%)
HEAT repeat 651..676 CDD:293787 17/24 (71%)
PC_rep 666..701 CDD:280095 25/34 (74%)
rpn-2NP_498346.2 RPN2 38..959 CDD:227446 353/1012 (35%)
PC_rep 418..449 CDD:280095 16/30 (53%)
PC_rep 489..523 CDD:280095 14/33 (42%)
HEAT repeat 577..606 CDD:293787 12/28 (43%)
HEAT repeat 616..641 CDD:293787 18/24 (75%)
PC_rep 630..663 CDD:280095 24/33 (73%)
HEAT repeat 650..672 CDD:293787 11/22 (50%)
HEAT repeat 689..716 CDD:293787 12/26 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166504
Domainoid 1 1.000 173 1.000 Domainoid score I2218
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 571 1.000 Inparanoid score I574
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53911
OrthoDB 1 1.010 - - D235012at2759
OrthoFinder 1 1.000 - - FOG0004235
OrthoInspector 1 1.000 - - oto19088
orthoMCL 1 0.900 - - OOG6_101410
Panther 1 1.100 - - LDO PTHR10943
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1203
SonicParanoid 1 1.000 - - X2978
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.940

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