DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slbp and cdl-1

DIOPT Version :9

Sequence 1:NP_477480.1 Gene:Slbp / 43448 FlyBaseID:FBgn0041186 Length:276 Species:Drosophila melanogaster
Sequence 2:NP_496320.4 Gene:cdl-1 / 174659 WormBaseID:WBGene00000411 Length:382 Species:Caenorhabditis elegans


Alignment Length:317 Identity:81/317 - (25%)
Similarity:125/317 - (39%) Gaps:77/317 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ENTPQKGSGSLNSSASSISIDVKPTMQSWAQEVRAEFGHSDEASSSLNSSAASCGSLAKKETADG 75
            :.||.||:.|            .|..::|...::|......:..|..:.:..|..|.|:....|.
 Worm    18 QKTPTKGTRS------------SPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDD 70

  Fly    76 NLESKDGEGREMAFE---------FLDGVNEVKFERLVK--EEKLKTPYKRRHSFTPPSNEN--- 126
            .|.|:..|.|....|         ..:..|:.||.|.::  .|..::...||...:.....|   
 Worm    71 ELASRLEEERRCKSESRRKGQPKRAQNSQNKPKFVRSLELTNEVFQSTSSRRSQRSKSRTRNGDT 135

  Fly   127 -------------SRSNSPNS-----SNSSANGDAAAPKGGNNPHSRNSKKSGNFRAHKEEKRVR 173
                         ..|:.|.|     ||:|...:.|:|       |:...::|.    ...|..|
 Worm   136 ITTVEEHTETVVMESSSGPISRKRCLSNASTINEGASP-------SKRRPETGK----SNRKAPR 189

  Fly   174 HNSYTSSTSSSSSYTEA----------------DPAILSRRQKQIDYGKNTAAYERYVEMVPKDE 222
            ...:|:..|.|||...:                |.|:|.||.::||..|..|.|:||...||..:
 Worm   190 GRLFTNGGSDSSSVASSPSRRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRD 254

  Fly   223 RTR-DHPRTPNKYGKYSRRAFDGLVKIWRKSLHIY--DPPTQARDTAKDSNSDSDSD 276
            |.: .|||||||...:|||::|..:|.|::||:.|  :.|:   |:...|...||||
 Worm   255 RIKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPS---DSVNTSFCYSDSD 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlbpNP_477480.1 SLBP_RNA_bind 191..256 CDD:291900 30/65 (46%)
cdl-1NP_496320.4 SLBP_RNA_bind 222..289 CDD:291900 30/66 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166825
Domainoid 1 1.000 67 1.000 Domainoid score I6456
eggNOG 1 0.900 - - E1_KOG3934
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 76 1.000 Inparanoid score I3854
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003353
OrthoInspector 1 1.000 - - oto17717
orthoMCL 1 0.900 - - OOG6_103940
Panther 1 1.100 - - LDO PTHR17408
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2795
SonicParanoid 1 1.000 - - X2243
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.910

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