DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Slbp and Slbpl

DIOPT Version :10

Sequence 1:NP_477480.1 Gene:Slbp / 43448 FlyBaseID:FBgn0041186 Length:276 Species:Drosophila melanogaster
Sequence 2:NP_001257345.2 Gene:Slbpl / 100363294 RGDID:2323347 Length:169 Species:Rattus norvegicus


Alignment Length:74 Identity:37/74 - (50%)
Similarity:54/74 - (72%) Gaps:1/74 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 EADPAILSRRQKQIDYGKNTAAYERYVEMVPKDERTRD-HPRTPNKYGKYSRRAFDGLVKIWRKS 252
            |.|..:|.||||||||||.|..|:.:::.||:.:|... ||:||||..:||||::|..::.||::
  Rat    26 ETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRA 90

  Fly   253 LHIYDPPTQ 261
            ||.:|||:|
  Rat    91 LHTWDPPSQ 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlbpNP_477480.1 SLBP_RNA_bind 191..258 CDD:464587 32/67 (48%)
SlbplNP_001257345.2 SLBP_RNA_bind 27..96 CDD:464587 32/68 (47%)

Return to query results.
Submit another query.