DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ctl2 and slc44a1b

DIOPT Version :9

Sequence 1:NP_651670.1 Gene:Ctl2 / 43440 FlyBaseID:FBgn0039637 Length:796 Species:Drosophila melanogaster
Sequence 2:XP_021336769.1 Gene:slc44a1b / 503933 ZFINID:ZDB-GENE-050309-63 Length:752 Species:Danio rerio


Alignment Length:813 Identity:201/813 - (24%)
Similarity:327/813 - (40%) Gaps:229/813 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 DRSCTDVPCLLLFVLFLGGWAFIAQYAIRNGDLNKLLVPTDSFNRKCGMD---------SGVLNK 83
            ||||||:|..|||.|||.|...|..:.|..|...:|:...||:...||..         ||:.:.
Zfish    31 DRSCTDLPWFLLFTLFLVGMCGICGFTIATGGAARLVFGYDSYGNTCGQRNEPIEGVRLSGLDHT 95

  Fly    84 KNLFFFDLNQCIDPLVPITGCDTPQVCVETCPRETFVWDTMKDKQSFAELHSRLICLSEEHKAQI 148
            ...|.|.|:.|...::. ....:..:||..||.|..:  |..|.:.||.::...:|..|      
Zfish    96 DRKFVFFLDPCNIDIIQ-RKIKSMALCVSQCPTEELL--TYYDLKRFAMMNGSELCSYE------ 151

  Fly   149 RTKSDIQDAINQNQCARWYIKSAPFLKRCLFEFSQGVCDYIPSFLLNGGRSRRELHMLPGNATTE 213
                                                                     |||:....
Zfish   152 ---------------------------------------------------------LPGHKYPS 159

  Fly   214 VQMQADVMYQKMTDAQALVVPQANGKQTPVDEEPIIQCKRRLNEAVIKEKMMQTDTRLAKLVGNM 278
            :..:.| ...|:...::..:|..| :.||||    |.|..:..|||:  ..:..::.|.:|:..:
Zfish   160 LPERFD-KCPKLPVPESKALPVFN-RCTPVD----ISCYAKFAEAVV--TFVSDNSMLNRLIAGV 216

  Fly   279 VAHFYNGTNDAQLLGEKIVEDLVNSWSIVLVACFCTLVASLIYIALMRWLSAPILWFSIFGVLIG 343
            .|                      |..|::..|...||.|:|.:.::|::||.::|.....|::|
Zfish   217 AA----------------------SKEIIVGLCLLALVLSMILMVIIRYISAVLVWILTALVVLG 259

  Fly   344 LLVGIYFSVKQYIHWENTPTVPVHGLNLHSTVKNVLQN---------------QNTWLY---LSI 390
            .|.|.......||.:..|         ::.|:...|..               |...:|   .::
Zfish   260 SLGGTSVLWWLYIDYRMT---------MNETMTKDLTETEEPNGGMKPTKDHAQGLLIYAVSATV 315

  Fly   391 FVGVCFVVILLLVIVLRKRIRIAIALTKEGSK--------AVSSVISTVFFPIFSWILFIAAIAF 447
            |.|    ::|||::.:|||:.:.|||.....|        |:....:.:...:| |:.:|..:  
Zfish   316 FTG----ILLLLMLFMRKRVALTIALFHVAGKVFIHLPLLALQPFCTFLALSLF-WVYWIMVL-- 373

  Fly   448 AIGVGLYLGSIGDPSFRMVRQLTKSGEVTTEDCVCEGPAINYTVGGSCKPEVFQQYCSVRLTSFF 512
                 |:||:.|:|.             ..||.    ..:.:.:.|:                  
Zfish   374 -----LFLGTTGNPE-------------KNEDT----GLVEFRLSGA------------------ 398

  Fly   513 QNRNPCLNTTCSFDSINNPIEIKWAIFYNVFGFLWLSFFISAFSYMVLASTFARWYWTFKKRDVP 577
                                 :::..:|:..|.:|:|.||.|...|.:|.....:|:|..|..:|
Zfish   399 ---------------------LQYMTWYHAVGLIWISEFILACQQMTVAGAVVTYYFTRDKTKLP 442

  Fly   578 YFTLTRAFFQTAVYHLGTVAFGSLILAIVRLIRLVLEYIHEKLKKYDNAVTRAILCCMRCFFWLL 642
            ...:..:..:...|||||||.||.|:.:|::.||:|.|||.:||..:||..|.:|....|..|.|
Zfish   443 VTPILSSVLRLVRYHLGTVAKGSFIITLVKIPRLILMYIHNQLKGKENACARCMLKACICCLWCL 507

  Fly   643 ETFLKFLNRNAYIMCAIHGKNFCSSAADSFNLIMRNFLRVVTLDQVTDFLFFLSKLLL---TAGA 704
            |..|.:||:|||...||:..:||:||.|:|.:::.|.|||.|::.|.||:.||.|:|:   ||.|
Zfish   508 EKCLNYLNQNAYAATAINSTSFCTSARDAFMILVENALRVATINTVGDFVLFLGKVLIVTCTAFA 572

  Fly   705 GASTYYFLDNNPSIIRLNY------IAVPTTVVVIAAFLITSVFFGVYSTAVDTLFLCFLEDCER 763
            |            ::.|||      ..:|..:|.:.|||:...|..::...||.|||||..|.:.
Zfish   573 G------------VLALNYQRDYTEWVLPLIIVCLFAFLVAHCFLSIFEIVVDVLFLCFAIDTKY 625

  Fly   764 NDGSPEKPFFMSKQLMKILGKKNNLPPRQRRGK 796
            |:|:|.:.|:|.|.||:.:.........:.||:
Zfish   626 NNGTPGREFYMDKALMEFVENSRRSMAMEERGR 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ctl2NP_651670.1 Choline_transpo 407..761 CDD:282384 105/370 (28%)
slc44a1bXP_021336769.1 Choline_transpo 313..622 CDD:309592 110/388 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1362
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D329225at2759
OrthoFinder 1 1.000 - - FOG0000381
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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