DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ctl2 and slc44a3

DIOPT Version :9

Sequence 1:NP_651670.1 Gene:Ctl2 / 43440 FlyBaseID:FBgn0039637 Length:796 Species:Drosophila melanogaster
Sequence 2:XP_017949102.1 Gene:slc44a3 / 100488884 XenbaseID:XB-GENE-6050291 Length:652 Species:Xenopus tropicalis


Alignment Length:814 Identity:197/814 - (24%)
Similarity:314/814 - (38%) Gaps:254/814 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 RQRD------RSCTDVPCLLLFVLFLGGWAFIAQYAIRNGDLNKLLVPTDSFNRKCG-MDSGVLN 82
            |||.      |.|||:|.|:||.:|..|..|||.||:..|...:|:...||:...|| .:|.:.|
 Frog    14 RQRQWRPLIYRKCTDIPWLVLFFVFWSGLVFIAGYALVAGAAERLVFGYDSYGNVCGRRNSPIPN 78

  Fly    83 ----------KKNLFFFDLNQCIDPLVPITGC---------DTPQVCVETCPRETFVWDTMKDKQ 128
                      :|::||.|            .|         ::..:||..||:|..  :|:.:.|
 Frog    79 APFSGQDMTYRKHVFFLD------------SCNLEIRNLKINSVALCVSDCPQEQL--NTLHEVQ 129

  Fly   129 SFAELHSRLICLSEEHKAQIRTKSDIQDAINQNQCARW-------YIKSAPFLKRCLFEFSQGVC 186
            .||:.:...:|:.:.:..:..|         ..:...|       ..||.|...||         
 Frog   130 FFAKNNGSYLCVYKLNYTEYTT---------HTKALEWCPVLPVPSSKSFPLFNRC--------- 176

  Fly   187 DYIPSFLLNGGRSRRELHMLPGNATTEVQMQADVMYQKMTDAQALVVPQANGKQTPVDEEPIIQC 251
                                                          |||          .|  .|
 Frog   177 ----------------------------------------------VPQ----------NP--DC 183

  Fly   252 KRRLNEAVIKEKMMQTDTRLAKLVGNMVAHFYNGTNDAQLLGEKIVEDLVNSWSIVLVACFCTLV 316
            ..|....:|.             |.|.|..|:.     .|.|....:|.|...||:.|.....:|
 Frog   184 YSRFASVLIN-------------VVNEVDFFHR-----ILSGIMAGKDNVIGLSILAVGLSVIMV 230

  Fly   317 ASLIYIALMRWLSAPILWFSIFGVLI--GLLVGIYFSVKQYIHWENTPTVPVHGLNLHSTVKNVL 379
            .:.::|:.:  |....|...|||:|.  |:|..:|     |.| .|.|:..:      .|.|   
 Frog   231 LTFLFISTL--LVHIFLTLLIFGLLFVSGVLWWLY-----YDH-VNDPSYEL------ETEK--- 278

  Fly   380 QNQNTWLYLSIFVGVCFVVILLLVIVLRKRIRIAIALTKEGSKAVSSVISTVFFP-------IFS 437
            :|....|..:|...:..:|:|..:.||||.|::.|.|....||.:..:...|..|       ||.
 Frog   279 ENAKFLLGFAIIATLVTIVLLTFIFVLRKSIQMTIQLFLVTSKFIRCMPLLVLQPVWTFVILIFY 343

  Fly   438 WILFIAAIAFAIGVGLYLGSIGDPSFRMVRQLTKSGEVTTEDCVCEGPAINYTVGGSCKPEVFQQ 502
            |:|::|.:       |.||:.|:      .|::..|:|                          :
 Frog   344 WVLWVAVL-------LSLGTSGN------AQVSPEGQV--------------------------E 369

  Fly   503 YCSVRLTSFFQNRNPCLNTTCSFDSINNPIE-IKWAIFYNVFGFLWLSFFISAFSYMVLASTFAR 566
            |                          .|:. |::..:|::.||:|.|.|..|...|:::.....
 Frog   370 Y--------------------------KPLAGIRYMWWYHLIGFIWTSEFFLACQQMIISGATVS 408

  Fly   567 WYWTFKKRDVPY---FTLTRAFFQTAVYHLGTVAFGSLILAIVRLIRLVLEYIHEKLK-KYDNAV 627
            ||....|..:.:   .:|:..|:    |||||...||.::.::|:.|:||.|..:.|: |.||..
 Frog   409 WYLHRDKNKIRHPILSSLSLVFW----YHLGTAIIGSFLITLMRIPRMVLCYTFQLLRDKPDNVC 469

  Fly   628 TRAILCCMRCFFWLLETFLKFLNRNAYIMCAIHGKNFCSSAADSFNLIMRNFLRVVTLDQVTDFL 692
            :|..|.|..|..:..|.|||.|::|||....|:|..||:||.|::.::.:|...|.:|:....||
 Frog   470 SRCTLKCCACSSFCFEKFLKSLDQNAYTASIINGTPFCTSANDAYGILAKNPPHVSSLNCSGVFL 534

  Fly   693 FFLSKLLLT-----AGAGASTYYFLDNNPSIIRLNYIAVPTTVVVIAAFLITSVFFGVYSTAVDT 752
            ..|.|:.:.     .|..|..|:        ..|:..|:|..:|...|:|::..|..::.|.:.:
 Frog   535 ILLGKVFVVCFTVFGGLMAFNYH--------RELHVWAIPLLLVAFFAYLVSHCFLSLFETVIHS 591

  Fly   753 LFLCFLEDCERNDGSPEKPFFMSKQLMKILGKKN 786
            ||||:..|.|.||||.|||:||.:.|..::.:.|
 Frog   592 LFLCYAVDIETNDGSLEKPYFMEQDLKALIHQTN 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ctl2NP_651670.1 Choline_transpo 407..761 CDD:282384 94/370 (25%)
slc44a3XP_017949102.1 Choline_transpo 289..601 CDD:367975 100/388 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D329225at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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