DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdhb and pdhb

DIOPT Version :9

Sequence 1:NP_651668.1 Gene:Pdhb / 43437 FlyBaseID:FBgn0039635 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001016212.1 Gene:pdhb / 548966 XenbaseID:XB-GENE-977343 Length:360 Species:Xenopus tropicalis


Alignment Length:356 Identity:243/356 - (68%)
Similarity:292/356 - (82%) Gaps:6/356 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LRTRLIQAASSA----QRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVFILGEEVAQYDGA 62
            ||:......||.    :|:|..|..  ||.|:|||||||.|:|:|:.||:|||:|||||||||||
 Frog     4 LRSLFCGGKSSVSVFLKRSFHRSTP--AALQVTVRDALNQAIDEEIERDERVFLLGEEVAQYDGA 66

  Fly    63 YKVSRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGLRPVCEFMTWNFSMQAIDHIINSAAKTF 127
            ||:|||||||||||||:||||:||||||||||||||||||:|||||:||||||||.:|||||||:
 Frog    67 YKISRGLWKKYGDKRVMDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTY 131

  Fly   128 YMSAGAVNVPIVFRGPNGAASGVAAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDP 192
            |||||.|.|||||||||||::||||||||||||||||||||||:||::||||:|||||||||.:|
 Frog   132 YMSAGLVPVPIVFRGPNGASAGVAAQHSQCFAAWYAHCPGLKVVSPWNAEDAKGLLKSAIRDNNP 196

  Fly   193 VVFLENELVYGTAFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAAELAKKGI 257
            ||||||||:||..|.:::....||:::||||||:.|||..||||:||::|...|.||..|||:|:
 Frog   197 VVFLENELMYGVPFELSEQAQSKDYVIPIGKAKIERPGSQITLVSHSRSVGHCLEAANVLAKEGV 261

  Fly   258 EAEVINLRSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAEICARIMEDQTFFELDAPVWRCA 322
            :.||||:|:|||:|..||..||.||:||||||.||||.|||:||||:|||...|..|||||.|..
 Frog   262 DCEVINMRTIRPMDIETIETSVVKTNHLVTVEGGWPQFGVGSEICAKIMEGPAFNYLDAPVVRVT 326

  Fly   323 GVDVPMPYAKTLEAHALPRVQDLVEATLKVL 353
            |.||||||||.||.:.:|:|:|::.|..|.|
 Frog   327 GTDVPMPYAKILEENCVPQVKDIIFAVKKTL 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdhbNP_651668.1 PLN02683 2..352 CDD:215368 241/353 (68%)
TPP_PYR_E1-PDHc-beta_like 33..199 CDD:132919 140/165 (85%)
Transketolase_C 222..340 CDD:280875 74/117 (63%)
pdhbNP_001016212.1 PRK11892 <32..355 CDD:237011 232/322 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 313 1.000 Domainoid score I1289
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H712
Inparanoid 1 1.050 488 1.000 Inparanoid score I1398
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D314250at33208
OrthoFinder 1 1.000 - - FOG0002922
OrthoInspector 1 1.000 - - oto102722
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R864
SonicParanoid 1 1.000 - - X2740
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

Return to query results.
Submit another query.