DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdhb and Pdhb

DIOPT Version :9

Sequence 1:NP_651668.1 Gene:Pdhb / 43437 FlyBaseID:FBgn0039635 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001007621.1 Gene:Pdhb / 289950 RGDID:1359146 Length:359 Species:Rattus norvegicus


Alignment Length:353 Identity:243/353 - (68%)
Similarity:288/353 - (81%) Gaps:2/353 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLRTRLIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVFILGEEVAQYDGAYKV 65
            ::|..|.||:...:|.|..|  |.||.|:|||:|:|..:|:||.||::||:||||||||||||||
  Rat     7 LVRGPLRQASGLLKRRFHRS--APAAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKV 69

  Fly    66 SRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGLRPVCEFMTWNFSMQAIDHIINSAAKTFYMS 130
            ||||||||||||:|||||:||||||||||||||||||:|||||:||||||||.:|||||||:|||
  Rat    70 SRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMS 134

  Fly   131 AGAVNVPIVFRGPNGAASGVAAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDPVVF 195
            ||...|||||||||||::||||||||||||||.|||||||:||:::|||:||:||||||.:|||.
  Rat   135 AGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVM 199

  Fly   196 LENELVYGTAFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAAELAKKGIEAE 260
            |||||:||.||.:......||||:||||||:.|.|..||:||||:.|...|.|||.|:|:|||.|
  Rat   200 LENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECE 264

  Fly   261 VINLRSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAEICARIMEDQTFFELDAPVWRCAGVD 325
            |||||:|||:|...|.|||.||:||||||.||||.||||||||||||...|..||||..|..|.|
  Rat   265 VINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGAD 329

  Fly   326 VPMPYAKTLEAHALPRVQDLVEATLKVL 353
            |||||||.||.:::|:|:|::.|..|.|
  Rat   330 VPMPYAKILEDNSIPQVKDIIFAIKKTL 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdhbNP_651668.1 PLN02683 2..352 CDD:215368 241/349 (69%)
TPP_PYR_E1-PDHc-beta_like 33..199 CDD:132919 133/165 (81%)
Transketolase_C 222..340 CDD:280875 77/117 (66%)
PdhbNP_001007621.1 PLN02683 6..356 CDD:215368 241/348 (69%)
TPP_PYR_E1-PDHc-beta_like 37..203 CDD:132919 133/165 (81%)
Transketolase_C 226..349 CDD:280875 80/122 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342024
Domainoid 1 1.000 304 1.000 Domainoid score I1332
eggNOG 1 0.900 - - E1_COG0022
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H712
Inparanoid 1 1.050 485 1.000 Inparanoid score I1391
OMA 1 1.010 - - QHG53958
OrthoDB 1 1.010 - - D314250at33208
OrthoFinder 1 1.000 - - FOG0002922
OrthoInspector 1 1.000 - - oto95982
orthoMCL 1 0.900 - - OOG6_101309
Panther 1 1.100 - - LDO PTHR11624
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2740
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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