DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdhb and pdhb-1

DIOPT Version :9

Sequence 1:NP_651668.1 Gene:Pdhb / 43437 FlyBaseID:FBgn0039635 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_500340.1 Gene:pdhb-1 / 177108 WormBaseID:WBGene00015413 Length:352 Species:Caenorhabditis elegans


Alignment Length:339 Identity:234/339 - (69%)
Similarity:278/339 - (82%) Gaps:2/339 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 RAFSTSQKALAAKQMTVRDALNSALDDELARDDRVFILGEEVAQYDGAYKVSRGLWKKYGDKRVI 79
            |...||.:  ||..||||||||.|:|:|:.||||||::||||||||||||:|:|||||:|||||:
 Worm    13 RLAGTSTR--AASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVV 75

  Fly    80 DTPITEMGFAGIAVGAAMAGLRPVCEFMTWNFSMQAIDHIINSAAKTFYMSAGAVNVPIVFRGPN 144
            |||||||||||||||||.|||||:|||||:||||||||.||||||||:|||||.|.|||||||||
 Worm    76 DTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPN 140

  Fly   145 GAASGVAAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDPVVFLENELVYGTAFPVA 209
            |||:||||||||.|:|||||||||||:.||.||||:||||:||||.:||||||||::||.:|||.
 Worm   141 GAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVG 205

  Fly   210 DNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAAELAKKGIEAEVINLRSIRPLDTAT 274
            |.|...||:|||||||:.|.|..:|:|::|:.||.||.||.:|...|:.||||||||:||.|..:
 Worm   206 DEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFES 270

  Fly   275 IFASVRKTHHLVTVENGWPQHGVGAEICARIMEDQTFFELDAPVWRCAGVDVPMPYAKTLEAHAL 339
            |..||.||||||:||.|||..|:|:||.|::||...|.:||||:.|..||||||||.:||||.||
 Worm   271 IRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAAL 335

  Fly   340 PRVQDLVEATLKVL 353
            |..:.:|:|..|.|
 Worm   336 PTAEHVVKAVKKSL 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdhbNP_651668.1 PLN02683 2..352 CDD:215368 232/336 (69%)
TPP_PYR_E1-PDHc-beta_like 33..199 CDD:132919 137/165 (83%)
Transketolase_C 222..340 CDD:280875 68/117 (58%)
pdhb-1NP_500340.1 PLN02683 11..347 CDD:215368 232/335 (69%)
TPP_PYR_E1-PDHc-beta_like 29..195 CDD:132919 137/165 (83%)
Transketolase_C 218..341 CDD:280875 70/122 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160067
Domainoid 1 1.000 306 1.000 Domainoid score I743
eggNOG 1 0.900 - - E1_COG0022
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H712
Inparanoid 1 1.050 474 1.000 Inparanoid score I821
Isobase 1 0.950 - 0 Normalized mean entropy S229
OMA 1 1.010 - - QHG53958
OrthoDB 1 1.010 - - D314250at33208
OrthoFinder 1 1.000 - - FOG0002922
OrthoInspector 1 1.000 - - oto18000
orthoMCL 1 0.900 - - OOG6_101309
Panther 1 1.100 - - LDO PTHR11624
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R864
SonicParanoid 1 1.000 - - X2740
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1615.790

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