DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdhb and bckd-1B

DIOPT Version :9

Sequence 1:NP_651668.1 Gene:Pdhb / 43437 FlyBaseID:FBgn0039635 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_492149.1 Gene:bckd-1B / 172539 WormBaseID:WBGene00006518 Length:366 Species:Caenorhabditis elegans


Alignment Length:357 Identity:126/357 - (35%)
Similarity:190/357 - (53%) Gaps:17/357 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TRLIQAASSAQRAF--STSQKA----LAAKQMTVRDALNSALDDELARDDRVFILGEEVAQYDGA 62
            :|:.|....|...|  ||:..|    |...:|.:..::|.|:...:..||...:.||:|| :.|.
 Worm    14 SRISQTRGKAHFTFQPSTTLPAGLENLEKTKMNLMQSVNEAMRIAMETDDSAVLFGEDVA-FGGV 77

  Fly    63 YKVSRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGLRPVCEFMTWNFSMQAIDHIINSAAKTF 127
            ::.|..|.||:|..||.:||:.|.|.||..:|.|.||...:.|....::...|.|.::|.|||..
 Worm    78 FRCSLDLQKKFGKDRVFNTPLCEQGIAGFGIGVAAAGATAIAEIQFGDYIFPAYDQLVNEAAKFR 142

  Fly   128 YMSAGAVNV-PIVFRGPNGAASGVAAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPD 191
            |.|....:. .:..|...||....|..|||...|.:.|.||||::.|.....|:|||.|.||||:
 Worm   143 YRSGNQFDCGKLTVRTTWGAVGHGALYHSQSPEANFTHTPGLKLVVPRGPVQAKGLLLSCIRDPN 207

  Fly   192 PVVFLENELVYGTAFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAAELAKKG 256
            |.:|.|.:::|..|   :::|...|:.:|:|:|:.:|.|||:||||....|..: |.||:|||:.
 Worm   208 PCIFFEPKILYRLA---SEDVPTGDYTIPLGQAETVRSGKDLTLVAWGTQVHVA-LEAAQLAKEK 268

  Fly   257 IEA--EVINLRSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAEICARIMEDQTFFELDAPVW 319
            :.|  |||:|::|:|.|...:..||:||..|:.........|.|||| |..::.:.|..|::|:.
 Worm   269 LNADVEVIDLQTIQPWDEDHVVESVQKTGRLIVTHEAPISSGFGAEI-ASTVQKRCFLNLESPID 332

  Fly   320 RCAGVDVPMPYAKTLEAHALPRVQDLVEATLK 351
            |.||.|.|.|:..  |...||.|..:.:|..|
 Worm   333 RVAGFDTPFPHVH--EPFYLPTVHRVFDAIKK 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdhbNP_651668.1 PLN02683 2..352 CDD:215368 126/357 (35%)
TPP_PYR_E1-PDHc-beta_like 33..199 CDD:132919 61/166 (37%)
Transketolase_C 222..340 CDD:280875 46/119 (39%)
bckd-1BNP_492149.1 PTZ00182 6..364 CDD:185502 126/357 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0022
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D314250at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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