DRSC/TRiP Functional Genomics Resources

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Protein Alignment alpha-Man-Ib and Edem3

DIOPT Version :10

Sequence 1:NP_651667.1 Gene:alpha-Man-Ib / 43436 FlyBaseID:FBgn0039634 Length:685 Species:Drosophila melanogaster
Sequence 2:XP_038946376.1 Gene:Edem3 / 289085 RGDID:1561496 Length:949 Species:Rattus norvegicus


Alignment Length:490 Identity:141/490 - (28%)
Similarity:239/490 - (48%) Gaps:80/490 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 ERQ---SAVVAAFKHSWAGYKKYAWGHDNLKPIS--------------------QYSHEWFGLGL 275
            |:|   :.|:..|.|::..|.::|:..|.|.|::                    ::|       |
  Rat    49 EKQKLGNQVLEMFDHAYGNYMEHAYPADELMPLTCRGRVRGQEPSRGDVDDALGKFS-------L 106

  Fly   276 TIVDSLDTMYIMGLDDEFKEGRDWVEQSLRFDTKRDVNLFEVTIRVLGGLLSAYHLS------GD 334
            |::|||||:.::....||::....|.:.:..|....|::||..||||||||..:.|:      |:
  Rat   107 TLIDSLDTLVVLNKTKEFEDAVRKVLRDVNLDNDVVVSVFETNIRVLGGLLGGHSLAIMLKEKGE 171

  Fly   335 TM------FLAKAAELGNRLLPAFQSPSNIPYSDVNLGDLSAHSPK----WSPDSSTSEVTTIQL 389
            .|      .|..|.:||.:|||||.:.|.:||..:|| ......|:    ...|:.|:...|:.|
  Rat   172 YMQWYNDELLQMAKQLGYKLLPAFNTTSGLPYPRINL-KFGIRKPEARTGTETDTCTACAGTLIL 235

  Fly   390 EFRDLSRSTNISIYEQVAHKVNEKVHD-LEKNHGLVPIFINANTGTFRNYATISLGARGDSYYEY 453
            ||..|||.|..:::|:.|.|..:.:.: .:::..||.:.||.:||.:....: .:||..||||||
  Rat   236 EFAALSRFTGATVFEEYARKALDFLWEKRQRSSNLVGVTINIHTGDWVRKDS-GVGAGIDSYYEY 299

  Fly   454 LLKQWIQTGRKDNDNLILDYMQAVDGVLTQLMRRTPREHWVYIGE-LINGKDFKPKMDHLTCYLP 517
            |||.::..|   :|:.:..:....|.:: :.:.:.|....|:|.: ::|.:.:   ||.|..:.|
  Rat   300 LLKAYVLLG---DDSFLERFNTHYDAIM-RYISQPPLLLDVHIHKPMLNARTW---MDALLAFFP 357

  Fly   518 GTLILGHQNGMPDSHLILARDLLDTCYQTYMMNPTHLAAEISYFALTEKDDQDIYVKPNDAHNLL 582
            |..:|...          .|..::|....|.:...|       ..|.|....|..|  :.|.:.|
  Rat   358 GLQVLKGD----------IRPAIETHEMLYQVIKKH-------NFLPEAFTTDFRV--HWAQHPL 403

  Fly   583 RPEFVESLYYFYSITGNRTYQDMGWKIFQAFETHAKVNAGYTSMGNVKNTQSTRLRDLMESFWMS 647
            ||||.||.|:.|..||:..|.::|..:.:....:|:|..|:.:|   |:.::....|.|:||:::
  Rat   404 RPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPCGFAAM---KDVRTGSHEDRMDSFFLA 465

  Fly   648 ETLKYFYLLFSDDRKEI-DLEQWVFNSEGHPLPVY 681
            |..||.||||:|....| |:|.::|.:|.|.||::
  Rat   466 EMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLW 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IbNP_651667.1 Glyco_hydro_47 242..680 CDD:460241 137/476 (29%)
Edem3XP_038946376.1 Glyco_hydro_47 60..499 CDD:460241 137/476 (29%)
PA_EDEM3_like 666..791 CDD:239041
Blue background indicates that the domain is not in the aligned region.

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