DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Man-Ib and man1a1

DIOPT Version :9

Sequence 1:NP_651667.1 Gene:alpha-Man-Ib / 43436 FlyBaseID:FBgn0039634 Length:685 Species:Drosophila melanogaster
Sequence 2:XP_002932159.1 Gene:man1a1 / 100491314 XenbaseID:XB-GENE-998953 Length:643 Species:Xenopus tropicalis


Alignment Length:576 Identity:193/576 - (33%)
Similarity:312/576 - (54%) Gaps:64/576 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 LPQASAMAVAL-----PPPD-------SNKEQDIGG----------------IDILN----NVEE 180
            ||.:|.:...:     |||.       ..:|.::||                .|.||    :::.
 Frog    76 LPDSSKLLSGVFFQQSPPPQRPPAGLLGEEETELGGRLARIREEHERALREAKDTLNRPPDDIKR 140

  Fly   181 PVAQDPAEPLSEGEQLEQAIKNPLTLGGVSFKEHLKKIKPILAKGQH-FHGATNERQSAVVAAFK 244
            .:.:|....|.:|.         :|.|| ....|:.| :|:...|:. ...|..:::..:....|
 Frog   141 DIQRDKDRILVQGR---------VTAGG-KLPPHVFK-QPVGVVGKEPSDPAVKQKRDTIKEMMK 194

  Fly   245 HSWAGYKKYAWGHDNLKPISQYSH--EWFG--LGLTIVDSLDTMYIMGLDDEFKEGRDWVEQSLR 305
            .||..||:||||.:.||||.:..|  ..||  .|.||||:|||:||||:.||||:.::|||::|.
 Frog   195 FSWDNYKRYAWGMNELKPIQKQGHSSNLFGNIQGATIVDALDTLYIMGMMDEFKDAKEWVEKNLE 259

  Fly   306 FDTKRDVNLFEVTIRVLGGLLSAYHLSGDTMFLAKAAELGNRLLPAFQSPSNIPYSDVNLGDLSA 370
            |:...:|::|||.||.:|||||||::||:.:|..||.|||.:|||||.:|:.||::.:|:.....
 Frog   260 FNVNAEVSVFEVNIRFVGGLLSAYYISGEEVFRRKAVELGEKLLPAFNTPTGIPWALLNIKSGIG 324

  Fly   371 HSPKWSPDSST--SEVTTIQLEFRDLSRSTNISIYEQVAHKVNEKVHDLEKNHGLVPIFINANTG 433
            .:..|:...|:  :|..|:.|||..|::.:...::.:....:.:.::.|:|..||.|.::|.::|
 Frog   325 RNWPWASGGSSILAEFGTLHLEFMHLTQVSGNPVFAEKVMNIRKVLNRLDKPQGLYPNYLNPSSG 389

  Fly   434 TFRNYATISLGARGDSYYEYLLKQWIQTGRKDNDNLILDYMQAVDGVLTQLMRRTPREHWVYIGE 498
            .:..: .:|:|..||||||||||.|:.:.:.|.:...: |.::|..|.|.|:|:: .....||.|
 Frog   390 QWGQH-HVSVGGLGDSYYEYLLKAWLMSDKTDEEAKKM-YYESVQAVETHLIRKS-SSGLTYIAE 451

  Fly   499 LINGKDFKPKMDHLTCYLPGTLILGHQNGMPDS----HLILARDLLDTCYQTYMMNPTHLAAEIS 559
            ...|. .:.||.||||:..|...|| .:|.|:.    |:.||.::..||:::|......|..|..
 Frog   452 WKGGL-LEHKMGHLTCFAGGMFALG-ADGAPEDKTGHHIELAAEIARTCHESYDRTTMKLGPEAF 514

  Fly   560 YFALTEKDDQDIYVKPNDAHNLLRPEFVESLYYFYSITGNRTYQDMGWKIFQAFETHAKVNAGYT 624
            .|   :...:.|..:.|:.:.:||||.:|:..|.:..|.:..|:..||:..||.|.:.:|..||:
 Frog   515 RF---DGGVEAIATRQNEKYYILRPEVIETYMYMWRFTHDPKYRQWGWEAVQALEKYCRVEGGYS 576

  Fly   625 SMGNVKNTQSTRLRDLMESFWMSETLKYFYLLFSDDRKEIDLEQWVFNSEGHPLPV 680
            .:.:|.:..... .|:.:||:::|||||.||||||| ..:.||.|:||:|.||||:
 Frog   577 GVRDVYSAHPNH-DDVQQSFYLAETLKYLYLLFSDD-DLLPLEHWIFNTEAHPLPI 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IbNP_651667.1 Glyco_hydro_47 242..680 CDD:279825 169/447 (38%)
man1a1XP_002932159.1 Glyco_hydro_47 192..630 CDD:366693 169/447 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D263455at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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