DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Bicra and bicral

DIOPT Version :10

Sequence 1:NP_001263051.1 Gene:Bicra / 43435 FlyBaseID:FBgn0039633 Length:3003 Species:Drosophila melanogaster
Sequence 2:XP_002934727.3 Gene:bicral / 100491443 XenbaseID:XB-GENE-6043887 Length:1029 Species:Xenopus tropicalis


Alignment Length:1029 Identity:194/1029 - (18%)
Similarity:347/1029 - (33%) Gaps:297/1029 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1599 PVRKPKATPTNASE-----LANLKNASVVKPMPKLDPLSQKPNNNPVQIVQPN--VAS------- 1649
            |....|.....|:|     |.:|.:...:....:..|:.....:.|..|:|.:  ||:       
 Frog    55 PKSSIKGVHNQAAEGHNDGLQSLSSLHFLDDELETSPIHDINEDQPFDILQKSLQVANITEQTLA 119

  Fly  1650 ----------GKQMIVVGSSSCTTTTTTTMSASIQPFQTTSGTKLVGVTVPMQQQQPTGTAAILQ 1704
                      ..|.....|....::::.|.:.||..:   ||..|..|.||:.||| .||     
 Frog   120 EEAYLDDSVVSSQHFATASVHSHSSSSFTQATSIPNY---SGQTLHSVGVPLVQQQ-VGT----- 175

  Fly  1705 QQQQQRTSFSLTATTVATPAPMPSPTVASGVSQLQMQQ---LPSQQAQQQLQPQQQQQLHAPKQQ 1766
                     |..:.||             ||....||.   :|||......| ....|:|.....
 Frog   176 ---------SFRSNTV-------------GVQHGFMQHVGIIPSQHIPSSNQ-NSSGQIHLIGSI 217

  Fly  1767 QPQP-----NTVSRVQTIQLTPQMQQI------FKQVQMQIQF-------------LTIKLQNKS 1807
            ..||     |.|...|.|..:.|....      |.:......|             :|....|..
 Frog   218 NNQPPVMAINNVDGSQIILKSGQQMPANSSGGSFVRQNGNAMFGSPDSSPAGHPVAVTSCGSNFQ 282

  Fly  1808 TFLPVS---------PEIDSATIAAYNKPMTDAEINLALQRLFAEQHRILASGKEVPTPEGMLPT 1863
            |.|||.         |..:...|....||:...:|...:..|..:||.:   .:.:|     ..:
 Frog   283 TSLPVHNIIIHRGSVPNANKMPINIQPKPVQAGQIPYNVNNLGMQQHHV---HQGIP-----FSS 339

  Fly  1864 ANGTGGFSLMPQ-PVQQQQQQQQ--QQLQSTVPEPLKTIVPANVVQPNNHSS---TPAGAATSGA 1922
            ||.....::..| ||.||..|:.  ||..|::      ::.:.:.|.:.|::   .|||.:    
 Frog   340 ANSPQSSAVSQQLPVHQQNPQKPVGQQPGSSI------VIHSPMGQAHGHTNQFVIPAGLS---- 394

  Fly  1923 TTAANIQQNITQRIHIYPMQHQQQQQQQQQQQQQQPQHQQQQPQHQLQQTGAKPKQAQPKPP--- 1984
                         ::..|:||.|....|..|.|.......|.....:..:|......:|..|   
 Frog   395 -------------VNSNPVQHIQSINTQLVQTQTAHLGPHQVSADHVMLSGNIANMVRPSQPYSG 446

  Fly  1985 --------------------PQQE-------------QQSQ-----LQIKPKEPANRSKVTSQQL 2011
                                |..:             |.||     |.:.|...:|     :|..
 Frog   447 QMLNSQGTAVQLISGQTFTGPSGQFIVNHGTSHIVGGQMSQVSPTVLHLSPSPGSN-----TQSR 506

  Fly  2012 QQNPQPPNGTINMLPQ----KVSMMPVVQQQ---------QQQQPQQH---QQQPMLNKSGPPPL 2060
            ...|..|:...||...    .:|...|:|..         .|||.:.|   .:..:...:|.|..
 Frog   507 STFPSLPHSNPNMSSSGRFTVLSSGTVIQSMGPSFHTSTGDQQQSRSHSGISESHVQTSTGQPAN 571

  Fly  2061 IFASSTNMLSNSNSNNLHNSNSAMQ--VNNMLPLPPLQPQQQPQPQLQQPPTPILPPVAPTMAM- 2122
            ||:|:      |.|.:..:...|.:  ::::.|:..|..|:..: |.|...|.:....:.:..| 
 Frog   572 IFSST------SGSQHTFSCGQAQKEVMDHVSPVSSLNNQENSR-QHQLCTTSLAGHHSGSKQMH 629

  Fly  2123 -GVAPG-PMGNLVPSLPTIPSLPLYMPSKMDEMPTQKPK-IARLSLFVRQLEVDQESCLKPDYVK 2184
             .|:|. |..|:..:    ...|:.:..:...|....|: :.:.||.:::|..||:..:..| ..
 Frog   630 YTVSPAQPQENIAGT----QLRPVEVDGRSGVMKMSGPRQLRKASLILQRLHKDQQHAVFLD-KN 689

  Fly  2185 PFRTKDEAVKRLIRYHCMHENDVELPSDE-----DEEFESTALEFQDKFRQLNGKFQEILMQEST 2244
            ||.:..:|.:||:.||....:   ||:|:     |.||||.::....|.:.:..|::.:|::::.
 Frog   690 PFESLSDAAERLLPYHVFQGS---LPTDDDLKKVDNEFESASIHLLKKTQSMLNKYRLLLLEDAM 751

  Fly  2245 LPHRTSELLQMQQLMIDDLKGEINEIRTAEKEL--------------EQQLKEEQTSEKSTAESD 2295
            ..:.::|::.:.::...:.:..:    |.||..              ..:.:||..:|...||.|
 Frog   752 RINPSAEVVMLDRIFNQEERATL----TCEKRFALVDPDGYLSEFCCSSKYQEESMAETLLAELD 812

  Fly  2296 VLSEAKVKE--------------------------------------EIKQEPIDKSAQPDGVVD 2322
            |.|...|..                                      .:|:|.:.|    ||.:.
 Frog   813 VNSSKTVANWCQNLRDKKDRNDLTESSRNDIIGLVPDSVTPQIPNAPSLKKEEVCK----DGKLK 873

  Fly  2323 KFDLLKNSADVNKAFSKSQPQQTTTVKQEESNESG-------EPSVNGSVKSEGHDKESSKYIKK 2380
            |..:......:.:. .:..|.....|.:||.|..|       .....|:.:.:.....:|....:
 Frog   874 KIGVSPRKHQLGEG-CRQHPLGLCKVSEEEDNPKGPKRPKLISEGTMGTAEEKCLQATTSGPSAR 937

  Fly  2381 DYDNFDIESELTTSFIMKKVENKAALAKSAENRYQERNMMDQQQQQQHIKANGG 2434
            :|::       .:|.:.:...|..:|..|::.     |::||:..::|::...|
 Frog   938 NYNS-------PSSILGRSDPNVKSLIHSSKT-----NVLDQKLTEKHLENKPG 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BicraNP_001263051.1 PHA03247 <753..1222 CDD:223021
GLTSCR1 2173..2271 CDD:464589 22/102 (22%)
SCP-1 <2212..2476 CDD:114219 46/287 (16%)
bicralXP_002934727.3 SP1-4_N <295..539 CDD:425404 51/279 (18%)
GLTSCR1 679..779 CDD:464589 24/107 (22%)
Blue background indicates that the domain is not in the aligned region.

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