DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11873 and bicra

DIOPT Version :9

Sequence 1:NP_001263051.1 Gene:CG11873 / 43435 FlyBaseID:FBgn0039633 Length:3003 Species:Drosophila melanogaster
Sequence 2:XP_012823408.2 Gene:bicra / 100135088 XenbaseID:XB-GENE-5891820 Length:1766 Species:Xenopus tropicalis


Alignment Length:2187 Identity:458/2187 - (20%)
Similarity:698/2187 - (31%) Gaps:776/2187 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   858 PNQNGSDGLPFTLTIPAPQPQSSTG---SQAAGNESATEI--PNILIKID----------PSAEA 907
            |:|.|.|.|.......|......||   .:|.||...||.  |...:.:|          |||.:
 Frog    26 PDQIGGDDLLDNTGDAASAFFVGTGLHVQEAPGNHLTTESNPPTASVDLDFLEDDDILGSPSAGS 90

  Fly   908 AVPPFGLSTPRLPTAEEIQKQAQQHLAQQAAAAAAAAKATTATPTINISLPSMTLQPQVAPAPVV 972
            |         .|.:|::.....||.| |:|.......:|.......:..||  ||||.|..||..
 Frog    91 A---------SLASADQPCDILQQSL-QEANITEQTLEAEAELDLGSFQLP--TLQPVVQAAPDG 143

  Fly   973 TPTPAPSSNQVSTTVVVKPRRKPAVRRNAKKPDVTSSASNMISSSSGTTTTISSSTSTILNNSQP 1037
            ||                                                .|.|..:.::...||
 Frog   144 TP------------------------------------------------QIFSGGADLIGLQQP 160

  Fly  1038 TTVNTITLTTPTPVTSSSNSTLMLTHGTPTAVPSQIGNIQISQVHNHHPSALPVSSAVENKIQIM 1102
            ..:....|...:......|..:.:   .|......:||:.|..:.|                  :
 Frog   161 AVLTHQALVQQSVGADVVNKAISV---QPFLQQVGLGNVTIQPISN------------------L 204

  Fly  1103 PILPPGATVMGGTPGTGGHAPTTQSTQLVFQPA----APSVAPT-ITSDSTGFKLSSDGRQMQLV 1162
            |.||.|:.  ||..|.|......|....:.|||    |..|.|| :.:...|..|:....:.|.|
 Frog   205 PGLPNGSP--GGALGIGQIQVVGQQVMAINQPAQQLIAKQVQPTQVANLPVGSYLAGTNTEQQQV 267

  Fly  1163 AIPQATPPSPAASSAQPPVPTPTPALTAGGATILPPQLTGM------PANVSVSVGSPASAAALV 1221
                                    .||:.|.:   ||.||:      ||..:...|:....:...
 Frog   268 ------------------------TLTSSGVS---PQNTGLVLQNKIPAVATTLNGNSMFGSVSA 305

  Fly  1222 PQLTGSLTLTVSEQCERLILRHDPNNPQDHQSQLILQALLKGALPNVTIINEPTRVDPNKQTTPM 1286
            .|.|.|||:| |.....:|::..|..         :|....|.||.......|...:||..|   
 Frog   306 AQCTQSLTVT-SSLNSPVIIQRTPTP---------IQPKPAGVLPQKLFQISPKPFNPNNAT--- 357

  Fly  1287 LQPQQQVIQIPQPLTQPQQILQQQPKVSTAPKIEVKVANNRKLSGQVTHPASSMLGMTSTTTTMS 1351
                         ||...:...||||                               |.......
 Frog   358 -------------LTIQGEAALQQPK-------------------------------TQQNLAFM 378

  Fly  1352 TMKPPANLPAKQNEVVS-FPQ-LPLNSQVLIQQQPMISAQLQPQLQPVTVPVSLPTQPVPIPSPA 1414
            |.||..|:      |:| ||| ||.|   :.:|.|   :|.|...:|::  |.|..|...|..||
 Frog   379 TGKPGPNV------VLSGFPQGLPTN---MFKQPP---SQQQALGKPMS--VQLLNQGSSIVIPA 429

  Fly  1415 PAPQLANNGQQRYI---------ALPPIDPTTQQLFCLNSVTNQITAMS--AGQT--AASIGPTE 1466
            ...|....||.:::         |:.|:.....      ::..||.|.|  .||.  .||.||..
 Frog   430 QHAQAMLQGQNQFLLPGQLAGASAVQPLSALQA------NMGGQILAASHPGGQAHIIASQGPGG 488

  Fly  1467 RLL--IAPAGI-NAQQLAQCLQLGQLHFNDVNPLPAQQQQQQVATTSSSMTLSMPLRPQPPQQQI 1528
            :||  ..||.| ..|.:|..|.|||:       |.:|...      .::..||.|::.|  ..|:
 Frog   489 QLLNQALPAQILTNQNIASQLNLGQV-------LASQNAH------GTAHILSGPIQLQ--AGQV 538

  Fly  1529 VHPI---QPITNGLAITTTASSTLTTTTSTTSLT-----TVTKQVANVAPIIDQSKAKLEPAKAA 1585
            ..|.   .|::...:::|.:.:::.|:.:....|     |:..|||...|..:..:| :...:|.
 Frog   539 GQPTLFQMPVSLAGSLSTQSQASVATSLNQAGQTVIQGVTLPNQVAMFNPSENLGQA-VSIQQAP 602

  Fly  1586 TSGAGGGAVVKKKPVRK--------PKATPTNASELANLKNASVVKPMPKLD------PLSQKPN 1636
            |..:....:|:::..::        |.|...:...:...:.||..:|..:|:      .|:..| 
 Frog   603 TGNSQSPGIVQQQQAQQVVQGASILPNADQPSILTVQTAQQASQGQPQLQLNVQQQTQSLAPPP- 666

  Fly  1637 NNPVQIVQ----PNVASGKQMIVVGSSSCTTTTTTTMSA-SIQPFQTTSGTKLVGVTVPMQQQQP 1696
              |.|.||    |::|:....|::|.:    |:.|.:|| |:|.|              :||:..
 Frog   667 --PQQAVQSQPSPSLATSPDKIILGGA----TSGTLLSAESMQMF--------------LQQKDQ 711

  Fly  1697 TGTAAILQQQQQQRTSFSLTATTVATPAPMP-------------------SPTV---------AS 1733
            ....|.|:.||:.    ||..|:.||..|||                   |.:|         ||
 Frog   712 QFYEAALKMQQES----SLVQTSAATHVPMPIYSLAASASTMNSSSTTTTSSSVPASVIVSSSAS 772

  Fly  1734 GVSQLQMQ------------------QLPSQQAQQ----------------------------QL 1752
            ..|||..:                  ..||.|:||                            ||
 Frog   773 SASQLNRELVQNLGTAAEPKGQSHIPHFPSSQSQQALACQIPSGQQKVPGASPSHSLPHPPSPQL 837

  Fly  1753 QP--------QQQQQLHAPKQQQP--------------QPNTVSRVQTIQL----TPQMQQIFKQ 1791
            ||        |...|...|.|.||              ||.:|.|..:..|    |||||.:| .
 Frog   838 QPSSSHLSQMQSPHQSRPPSQPQPLSRPPSRPHSRPPSQPQSVPRPPSEPLSRSCTPQMQNLF-V 901

  Fly  1792 VQMQIQFLTIKLQNKSTFLPVSPEIDSATIAAYNKPMTDAEINLALQRLFAEQHRILASGKEVPT 1856
            :|.||               .||...|                         ||.:    :....
 Frog   902 IQNQI---------------ASPHGSS-------------------------QHPL----RPPSQ 922

  Fly  1857 PEGMLPTANGTGGFSLMPQPVQQQQQQQQQQLQSTVPE-------PLKTIVPANVVQPNNHS--- 1911
            |:...|.|:...  |.:||.:...||..|.|:|.:.|:       |:.....|:...|..||   
 Frog   923 PQVQTPFASHQP--SDIPQTLSSPQQHIQLQVQLSTPQSEIRAGVPVSLQATASSSDPQTHSFQL 985

  Fly  1912 ----STPAGAATSGATTAANIQQNITQRIHIYPMQHQQQQQ---QQQQQQQQQPQHQQQQPQHQL 1969
                .||...:.|..|....:... |:....:.|.|.|.|.   |....||:|...:.||.| ||
 Frog   986 QFQAQTPIKTSISPQTAGQPLHLT-TESQRTFQMTHSQIQALSLQNSVPQQKQLLERYQQMQ-QL 1048

  Fly  1970 QQTGAKPKQAQPKPPPQQEQQSQLQIKPKEPANRSKVTSQQLQQNPQPPNGTINMLPQKVSMMPV 2034
            ||....|.|.|                         :||.|    ..|..|     .|.....|.
 Frog  1049 QQGLMLPSQQQ-------------------------ITSTQ----TSPALG-----GQYSGQAPS 1079

  Fly  2035 VQQQQQQQPQQHQQQPMLNKSGPPPLIFASSTNMLSNSNSNNLHNSNSAMQVNNMLPLPPLQPQQ 2099
            |....|.||.. .|.|:|..|  |..:....|..||..   .:..||.|.|::.:|       ||
 Frog  1080 VLTSGQGQPVL-SQGPLLGHS--PGQVLVQPTPDLSKV---QVGGSNQAAQLSTLL-------QQ 1131

  Fly  2100 QPQPQLQQPPTP------------ILPPVAPTMAMGVAPGPMGNLV-PSLPTIPSLPLYMPSK-- 2149
            |....|.:...|            .:||     .:.|.|.|:|..| ....::.:||:..|.|  
 Frog  1132 QQATVLVKSSAPSYCLLSAGSAAATVPP-----DVNVYPSPVGKSVGGQCKSVAALPVQTPGKTA 1191

  Fly  2150 ---------------------------------------------MDEMPTQKPKIARLSLFVRQ 2169
                                                         :.::||.:|  ::.:.|:..
 Frog  1192 VISSVSGLSLGKGSVQIQVVGKGMPQIVSTAQTPAQPQFESKFGALKKLPTLQP--SKEACFLEH 1254

  Fly  2170 LEVDQESCLKPDYVKPFRTKDEAVKRLIRYHCMHENDVELPSD---EDEEFESTALEFQDKFRQL 2231
            |...|.|.|.|||..||.:.::|..||:.|| :::..:....|   .|||||..:.:...:.:.:
 Frog  1255 LHKHQGSVLHPDYKSPFHSFEDAFHRLLPYH-VYQGLLPTTHDLRKVDEEFEVVSTQLLKRTQAM 1318

  Fly  2232 NGKFQEILMQESTLPHRTSELLQMQQLMIDDLKGEINEIRTAEKELEQQLKEEQTSEKSTAESDV 2296
            ..|::.:|::||.....::|::.:.::.|.:.|..::        |::||.:|:..|..::    
 Frog  1319 LNKYRLLLLEESKRVSPSAEMVMIDRMFIQEEKVALS--------LDRQLAKERPDEYVSS---- 1371

  Fly  2297 LSEAKVKEEIKQEP-IDKSAQPDGVVDKFDLLKNSADVNKAFSKSQPQQTTTVKQEESNESGEPS 2360
             |.::.:..:...| :..|..|   |...::||.:     ....|.|...|.:..:.|. .|.||
 Frog  1372 -SSSRSQTFVPMAPSVSSSPCP---VPAPEILKPT-----VVQTSTPIHPTKLVIKHSG-GGSPS 1426

  Fly  2361 VNGSVKSEGHDKESS---KYIKKDYDNFDIESELTTSFIMKKVENKAALAKSAENRYQERNMMDQ 2422
            |..:..|...|.:..   ...|.....::..|.:.   :..|::.:|.|:|...|          
 Frog  1427 VTWAKASPSLDTDDDALPSRSKPPIKTYEARSRIG---LKLKIKQEAGLSKVIHN---------- 1478

  Fly  2423 QQQQQHIKANGGDPVDQDD------------GWYCLQKELNLMNNDHMQQSQQQLNGNQQH-LPI 2474
                     ...|||.|:.            ....:.|.........:.....|:||..:| ||.
 Frog  1479 ---------TALDPVHQNPPPPPPPPAPPTVPTSTVIKAAVQSTPATITTPTGQMNGTLEHSLPA 1534

  Fly  2475 NRQP------APQQSHFLDNSNSNNMMGNSNHMSDLFPNGCIDKSNQSTTSSSNSSCVSESLPGS 2533
            .::|      .|.:..:.:|             .|.|..|                         
 Frog  1535 EKKPLATYCRLPLRKTYREN-------------VDAFVTG------------------------- 1561

  Fly  2534 NPVKTVSSCSGQREQPVVMDADQQNE--HPAISEFFSSDSDVQKSVETRLEAMFG---------- 2586
            .|...:|......:.|.||...:|.:  ...|:...:..|...:.|:....|..|          
 Frog  1562 KPADVLSKMDKPAQPPTVMHQVKQEDGSRSVITSHKTQGSSHTEKVKKEENAKLGIYHRVEPKTN 1626

  Fly  2587 ---ESPVHL--DVKSSNDA-------NDIESNLDEIFGDSKSPAANHKSKMSMWVPDASFMQQAP 2639
               |:||.|  |||..:.:       .:...|..|:..:.:.|:|.........|.:|||...:|
 Frog  1627 NSDENPVGLRHDVKDDDQSYYRKIIKTEPPDNEAELNWEMQLPSAKRLKSEPFDVDNASFSSDSP 1691

  Fly  2640 QQQTSQQQQQYA-----GPQQPSQQQHHIELNCNNNPRWMQSMEAHYSDFLSTGTSNGELVNGES 2699
            |..|..:..|.|     ..|||..                                         
 Frog  1692 QDDTLNEHLQSAIDSILNLQQPQS----------------------------------------- 1715

  Fly  2700 RKRSWDSQLMGSGSDMEDDNSSKRLCTASS---SSSSSPMSS 2738
                      |.|:     ||..|..|.||   ||||||.||
 Frog  1716 ----------GGGT-----NSLLRSSTQSSYHHSSSSSPFSS 1742

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11873NP_001263051.1 GLTSCR1 2170..2271 CDD:291902 27/103 (26%)
bicraXP_012823408.2 Med15 337..>683 CDD:312941 98/431 (23%)
Atrophin-1 802..>1009 CDD:397323 54/253 (21%)
GLTSCR1 1258..1359 CDD:405846 27/109 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I12012
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 141 1.000 Inparanoid score I4378
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto103643
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.050

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