DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cul5 and CUL3B

DIOPT Version :9

Sequence 1:NP_651665.2 Gene:Cul5 / 43434 FlyBaseID:FBgn0039632 Length:852 Species:Drosophila melanogaster
Sequence 2:NP_001319357.1 Gene:CUL3B / 843303 AraportID:AT1G69670 Length:732 Species:Arabidopsis thaliana


Alignment Length:677 Identity:189/677 - (27%)
Similarity:338/677 - (49%) Gaps:95/677 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 STSKKNPTEDSPVRKLMLDSWNKHIFHD--IKHRLQESAMKIVHAERNGDAYDAQLVVGVRESYV 263
            ||:||     :.|.:|.|..|..::.:.  |:.||..:.:.:||.||.|:..|..|:..|.:.::
plant   126 STTKK-----THVHELGLHLWRDNVVYSSKIQTRLLNTLLDLVHKERTGEVIDRVLMRNVIKMFM 185

  Fly   264 NLSSNAEDKLEIYRENFEMAYLKATVEFYRLKSAEQQQENGVLAYMKYADSKLREEEVRAKRYLE 328
            :|..:      :|:::||..:|:|:.|||:::|.|..:......|:|.|:..|.||..|...||:
plant   186 DLGES------VYQDDFEKPFLEASAEFYKVESMEFIESCDCGEYLKKAEKPLVEEVERVVNYLD 244

  Fly   329 PSSFSILTYTLVNVLIVDHLNSII-AECPALIR---DYETERLNLMFRLMDRVMHGVGVEPMMGD 389
            ..|.:.:|..:...:|.:|:..:: .|...|:.   :.:.|.:..|:.|..||.:|:..      
plant   245 AKSEAKITSVVEREMIANHVQRLVHMENSGLVNMLLNDKYEDMGRMYSLFRRVANGLVT------ 303

  Fly   390 LQRHIMSAGLADMLSASEVIT-----QDSEKYVERLLELFNKFSDLVRNAFNDDPRFLTARDIAF 449
             .|.:|:..|.:|  ..:::|     :|..::|:|||:..:|:..::..|||:|..|..|.:.:|
plant   304 -VRDVMTLHLREM--GKQLVTDPEKSKDPVEFVQRLLDERDKYDRIINMAFNNDKTFQNALNSSF 365

  Fly   450 KTVVNDTSVFKMELPTSIANRGVKYTAPESKCPELLANYCDMLLRRTPLSKRLTSEQIDARLRDV 514
            :..||                      ..::.||.::.:.|..||:.  .|.:..|.:|..|..|
plant   366 EYFVN----------------------LNTRSPEFISLFVDDKLRKG--LKGVGEEDVDLILDKV 406

  Fly   515 LLVLKYVNNKDVFMRYHKVHLTRRLILGTSADSEKEEDIVEWLR-EVGMPADYVNRLARMFQDIK 578
            :::.:|:..||||.:|:|.||.:||:.|.:...:.|.:::..|: |.|.  .:.::|..||.|:|
plant   407 MMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERNLIVKLKTECGY--QFTSKLEGMFTDMK 469

  Fly   579 VSEDLNTQFRTS---ISRHDAINIKILNAGAWARCSERVSVSLPIELEDYIPDVEEFYKKKHSGR 640
            .|.|....|..|   :|....:.:::|..|:|. ....:..:||.|:.........:|...|:||
plant   470 TSHDTLLGFYNSHPELSEGPTLVVQVLTTGSWP-TQPTIQCNLPAEVSVLCEKFRSYYLGTHTGR 533

  Fly   641 KLQWYHHMSNGTITFVNNFG---RYDLDVTTFQMAVLFAWNQRQHDKISYENLRLATELPDPELR 702
            :|.|..:|....|..|  ||   :::|:|:||||.||..:|  ..|::||:.:..|||:|.|:|:
plant   534 RLSWQTNMGTADIKAV--FGKGQKHELNVSTFQMCVLMLFN--NSDRLSYKEIEQATEIPTPDLK 594

  Fly   703 RTLWSLVAFPKIK-KQILLMEPAAISSPKDFAENTMFYINQEFAI----VKNGKSQRRGKLNLIG 762
            |.|.|:..   :| |.:|..||.:    |:.||...|.:|..||.    ||            ||
plant   595 RCLQSMAC---VKGKNVLRKEPMS----KEIAEEDWFVVNDRFASKFYKVK------------IG 640

  Fly   763 RL--QLSTERSQQEDNQSIVQLRILRTQEAIIKIMKVRKRMNNAALQGELIDILKNMFLPSKKMI 825
            .:  |..||..:||..|.:.:.|..:.:.||::|||.|:.:::..:..|:...|:..||.:...|
plant   641 TVVAQKETEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQTRFLANPTEI 705

  Fly   826 KEQLEWLIENKYMRRDDDDINMFIYVA 852
            |:::|.|||..::.||:.|..::.|:|
plant   706 KKRIESLIERDFLERDNTDRKLYRYLA 732

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul5NP_651665.2 Cullin 33..743 CDD:279260 155/560 (28%)
CULLIN 520..655 CDD:214545 40/138 (29%)
Cullin_Nedd8 779..846 CDD:214883 20/66 (30%)
CUL3BNP_001319357.1 Cullin 29..630 CDD:366357 155/561 (28%)
Cullin_Nedd8 659..726 CDD:214883 20/66 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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