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Protein Alignment CG11843 and St14

DIOPT Version :10

Sequence 1:	NP_651663.1	Gene:	CG11843 / 43432	FlyBaseID:	FBgn0039630	Length:	316	Species:	Drosophila melanogaster
Sequence 2:	NP_446087.1	Gene:	St14 / 114093	RGDID:	69288	Length:	855	Species:	Rattus norvegicus

Alignment Length:	272	Identity:	76/272 - (27%)
Similarity:	116/272 - (42%)	Gaps:	45/272 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly    60 NC----RSYT--PLIVGGHPAQPREFP---HMARLGRRPDPSSRADWFCGGVLISERFVLTAAHC 115
            ||    ||:|  ..:|||..|...|:|   .:..||:        ...||..|||..::::||||
  Rat   601 NCDCGLRSFTKQARVVGGTNADEGEWPWQVSLHALGQ--------GHLCGASLISPDWLVSAAHC 657

  Fly   116 LESERGEVNVVR----------LGELDFDSLDEDAAPRDYMVAGYIAHPGYEDPQFYHDIGLVKL 170
            .:.|    .:.:          ||.|| .|....:..:::.:...|.||.:.|..|.:||.|::|
  Rat   658 FQDE----TIFKYSDHTMWTAFLGLLD-QSKRSASGVQEHKLKRIITHPSFNDFTFDYDIALLEL 717

  Fly   171 TEAVVFDLYKHPACLPFQDE--RSSDSFIAVGWGSTGLALKPSAQLLKVKLQRYGNWVCKKLLTR 233
            .:...:.....|.|||....  .:..:....|||.|......:..|.|.:::......|::||.:
  Rat   718 EKPAEYSTVVRPICLPDNTHVFPAGKAIWVTGWGHTKEGGTGALILQKGEIRVINQTTCEELLPQ 782

  Fly   234 QVEEFPRGFDGNNQLCVG-SEMAQDTCNGDSGGPLLMYHREYPCMYVVVGITSAGLSCGSPGIPG 297
            |:.  ||      .:||| .....|:|.|||||||....::.....  .|:.|.|..|.....||
  Rat   783 QIT--PR------MMCVGFLSGGVDSCQGDSGGPLSSVEKDGRIFQ--AGVVSWGEGCAQRNKPG 837

  Fly   298 IYTRVYPYLGWI 309
            :|||:.....||
  Rat   838 VYTRIPEVRDWI 849

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.