DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11842 and Hgfac

DIOPT Version :10

Sequence 1:NP_651662.1 Gene:CG11842 / 43431 FlyBaseID:FBgn0039629 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_445772.1 Gene:Hgfac / 58947 RGDID:70909 Length:653 Species:Rattus norvegicus


Alignment Length:353 Identity:100/353 - (28%)
Similarity:145/353 - (41%) Gaps:78/353 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LGAVLLVSF--VAWASAQDSDIARTCTAYKRSV--WE-----ETSEFSFLIENAPIIYKTLDKCT 67
            :||..|:..  .|:....|.|....|...|.|.  ||     .....:.:....|.:..||.:.|
  Rat   321 VGAAALLGLGPHAYCRNPDKDERPWCYVVKDSALSWEYCRLAACESLARVHSRIPEVLATLPEST 385

  Fly    68 SYA---------------PLIIGGGPAVPKEFPHAAR--LGHKDENGEVEWFCGGTLISDRHVLT 115
            |.|               |.||||..::|...|..|.  :|    ||    ||.|:|:....|::
  Rat   386 STARPTCGKRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIG----NG----FCAGSLVHTCWVVS 442

  Fly   116 AAHCHYS--PQGSVNIARLGDLEFDTNNDDADPEDFDVKDFTAHPEFSYPAIYN----DISVVRL 174
            ||||..|  |:.|:.:. ||...|:...|..  :.|.::.:..:..:|   ::|    |:.::||
  Rat   443 AAHCFSSSPPRDSITVV-LGQHFFNRTTDVT--QTFAIEKYVPYTLYS---VFNPNDHDLVLIRL 501

  Fly   175 ----SRPVTFNDYKHPACLPFDDGRLGTSF-------IAIGWGQL-EIVPRTENKKLQKVKLYNY 227
                .|....:.:..|.|||    ..|:||       || |||.: |.|....|..|:.:     
  Rat   502 KKKGERCAVRSQFVQPICLP----EAGSSFPTGHKCQIA-GWGHMDENVSGYSNSLLEAL----- 556

  Fly   228 GTRCRITADRNDELPEGYNA---TTQLCIGSNEHK-DTCNGDSGGPVLIYHMDYPCMYHVMGITS 288
               ..:.||.....||.|.|   ...||.|..:.| |.|.||||||::........:|   ||.|
  Rat   557 ---VPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLVCEKNGVAYLY---GIIS 615

  Fly   289 IGVACDTPDLPAMYTRVHFYLDWIKQQL 316
            .|..|...:.|.:||||..|:|||..::
  Rat   616 WGDGCGRLNKPGVYTRVSNYVDWINDRI 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11842NP_651662.1 Tryp_SPc 73..315 CDD:238113 82/265 (31%)
HgfacNP_445772.1 FN2 99..145 CDD:128373
EGF_CA 159..194 CDD:238011
FN1 197..237 CDD:238018
EGF 242..274 CDD:394967
Kringle 283..364 CDD:395005 11/42 (26%)
Tryp_SPc 406..641 CDD:238113 82/264 (31%)
Blue background indicates that the domain is not in the aligned region.

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