DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkc98E and Prkca

DIOPT Version :9

Sequence 1:NP_001287577.1 Gene:Pkc98E / 43428 FlyBaseID:FBgn0003093 Length:739 Species:Drosophila melanogaster
Sequence 2:XP_038941139.1 Gene:Prkca / 24680 RGDID:3395 Length:722 Species:Rattus norvegicus


Alignment Length:715 Identity:318/715 - (44%)
Similarity:408/715 - (57%) Gaps:162/715 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 NR--RRGAMRRR-VHQVNGHKFMATFLRQPTFCSHCREFIWGIGKQGYQCQVCTLVVHKKCHLSV 222
            ||  |:||:|:: ||:|..|||:|.|.:||||||||.:||||.||||:|||||..||||:||..|
  Rat    18 NRFARKGALRQKNVHEVKDHKFIARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFV 82

  Fly   223 VSKCPGMRDEQPAKVEMVPAGQRFNVNLPHRFVVHSYKRFTFCDHCGSLLYGLIKQGLQCETCGM 287
            ...||| .|:.|...:  |..:       |:|.:|:|...||||||||||||||.||::|:||.|
  Rat    83 TFSCPG-ADKGPDTDD--PRSK-------HKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDM 137

  Fly   288 NVHKRCQKNVANTCGINTKQ-------MAEILS--------------------------SLGISP 319
            ||||:|..||.:.||::..:       .||:..                          .|.:.|
  Rat   138 NVHKQCVINVPSLCGMDHTEKRGRIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIP 202

  Fly   320 DKQQPRRSK------YLNQQGGEDNYGASLGADGDGAPGQSFRSCALSVDSLATSTTTMTS---- 374
            |.:...:.|      .||.|..|........:|.|.         .|||:......||...    
  Rat   203 DPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDR---------RLSVEIWDWDRTTRNDFMGS 258

  Fly   375 -GYNSSSCMSLAVTG----------------------SGGV-----------GATG-------ET 398
             .:..|..|.:..:|                      .|.|           |..|       |.
  Rat   259 LSFGVSELMKMPASGWYKLLNQEEGEYYNVPIPEGDEEGNVELRQKFEKAKLGPAGNKVISPSED 323

  Fly   399 RP------GKCSLLDFNFIKVLGKGSFGKVMLAEKKGTDEIYAIKVLKKDAIIQDDDVDCTMTEK 457
            |.      .:..|.||||:.|||||||||||||::|||:|:||||:||||.:||||||:|||.||
  Rat   324 RKQPSNNLDRVKLTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEK 388

  Fly   458 RILALAANHPFLTALHSCFQTPDRLFFVMEYVNGGDLMFQIQKARRFEASRAAFYAAEVTLALQF 522
            |:|||....||||.|||||||.|||:||||||||||||:.||:..:|:..:|.|||||:::.|.|
  Rat   389 RVLALLDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFF 453

  Fly   523 LHTHGVIYRDLKLDNILLDQEGHCKLADFGMCKEGIMNGMLTTTFCGTPDYIAPEILKEQEYGAS 587
            ||..|:|||||||||::||.|||.|:||||||||.:|:|:.|.|||||||||||||:..|.||.|
  Rat   454 LHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTTRTFCGTPDYIAPEIIAYQPYGKS 518

  Fly   588 VDWWALGVLMYEMMAGQPPFEADNEDELFDSIMHDDVLYPVWLSREAVSILKGFLTKNPEQRLGC 652
            |||||.|||:|||:||||||:.::|||||.|||..:|.||..||:|||||.||.:||:|.:||||
  Rat   519 VDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPAKRLGC 583

  Fly   653 TGD-ENEIRKHPFFAKLDWKELEKRNIKPPFRPKMK------------------------NP--- 689
            ..: |.::|:|.||.::||::||.|.|:|||:||::                        :|   
  Rat   584 GPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVQCTAEVRGFTAFSTQLFLILDISNSSPLSV 648

  Fly   690 ----------------------RDANNFDAEFTKEDPVLTPIGNEVVRCINQDEFAGFSFVNPKF 732
                                  :.|.|||..||:..|||||....|:..|:|.:|.|||:|||:|
  Rat   649 LILQNFCTKMHWLQWASRPSCGKGAENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNPQF 713

  Fly   733  732
              Rat   714  713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pkc98ENP_001287577.1 C2_PKC_epsilon 1..134 CDD:175981
C1_1 177..228 CDD:278556 34/50 (68%)
C1_1 252..304 CDD:278556 33/51 (65%)
STKc_nPKC_epsilon 412..729 CDD:270743 202/366 (55%)
PrkcaXP_038941139.1 C1_cPKC_rpt1 35..92 CDD:410383 37/57 (65%)
C1_cPKC_rpt2 102..155 CDD:410386 33/52 (63%)
C2_PKC_alpha_gamma 159..289 CDD:175992 20/138 (14%)
PKc_like 328..718 CDD:419665 211/386 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG51944
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000117
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X125
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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