DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf100 and LIG6

DIOPT Version :10

Sequence 1:NP_651658.1 Gene:Cpsf100 / 43426 FlyBaseID:FBgn0027873 Length:756 Species:Drosophila melanogaster
Sequence 2:NP_176845.2 Gene:LIG6 / 842991 AraportID:AT1G66730 Length:1396 Species:Arabidopsis thaliana


Alignment Length:362 Identity:73/362 - (20%)
Similarity:125/362 - (34%) Gaps:116/362 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   365 LAMELVENCAPGKQIELDVRRRVDL-------EGAELEE-------------------YLRTQGE 403
            :.:|:...|.  ::|.:|.|:...|       ||...|:                   |.|....
plant   244 ILVEIARRCK--RKIVVDARKMSMLSVLGCGEEGMFTEDENESDVHVVGWNVLGETWPYFRPNFV 306

  Fly   404 KLNPLIVKPDVEEESSSESEDDIEMSVITG------KHDIVVRPEGRHHSGFFKSNKRHHVMFPY 462
            |:|.::|:         :..|.:...|.||      ::...||         ||.:...|:: ||
plant   307 KMNEIMVE---------KGYDKVVGFVPTGWTYEVKRNKFAVR---------FKDSMEIHLV-PY 352

  Fly   463 HEEKVKCDEYGEIIN-LDDYRIADATGYEFVPMEEQNKENVKKEEPGIGAEQQANGGIVDNDVQL 526
            .|.. ..||..|.|. |...|:....|   |.:|:.:.:.|.|       .|:...|:||   ::
plant   353 SEHS-NYDELREFIKFLKPKRVIPTVG---VDIEKFDCKEVNK-------MQKHFSGLVD---EM 403

  Fly   527 LEKPTKLIS-QRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCE 590
            ..|...|:. .|::.:.|.         :||.:              :|.|......:.....||
plant   404 ANKKDFLLGFYRQSYQKNE---------KSDVD--------------VVSHSAEVYEEEEKNACE 445

  Fly   591 QNVGARVFTPQKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWV--DGRLGMRVKAIEA 653
            .  |.......:|.|:..|          |....|:|.. |.:|:..|||  :..|.:..|....
plant   446 D--GGENVPSSRGPILHDT----------TPSSDSRLLI-KLRDSLPAWVTEEQMLDLIKKHAGN 497

  Fly   654 PMDVT---VEQDASVQEGKTLTLET------LADDEI 681
            |:|:.   .|.:|.:.:..:|...:      |.||::
plant   498 PVDIVSNFYEYEAELYKQASLPTPSLNNQAVLFDDDV 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf100NP_651658.1 CPSF2-like_MBL-fold 7..204 CDD:293851
Beta-Casp 243..369 CDD:214983 0/3 (0%)
RMMBL 539..600 CDD:462191 8/60 (13%)
CPSF100_C 617..753 CDD:463836 18/76 (24%)
LIG6NP_176845.2 SNM1A-1C-like_MBL-fold 42..204 CDD:293831
DRMBL 274..380 CDD:429512 27/128 (21%)
PLN03113 748..1386 CDD:215584
Blue background indicates that the domain is not in the aligned region.

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