DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf100 and Ints11

DIOPT Version :9

Sequence 1:NP_651658.1 Gene:Cpsf100 / 43426 FlyBaseID:FBgn0027873 Length:756 Species:Drosophila melanogaster
Sequence 2:NP_082296.1 Gene:Ints11 / 71957 MGIID:1919207 Length:600 Species:Mus musculus


Alignment Length:763 Identity:154/763 - (20%)
Similarity:281/763 - (36%) Gaps:232/763 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IKLHTISGAMDESPPCYILQIDDVRILLDCGW------DEKF-DANFIKELKRQVHTLDAVLLSH 62
            |::..:....|....|.::.|....::||||.      |.:| |.::|.:..|....||.|::||
Mouse     4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68

  Fly    63 PDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDL-YMSHFNMGDFDLFSLDDVDTAFEKI 126
            ....|.|||||....:|.:.|||.|.|...:..:.:.|. .::....|:.:.|:...:....:|:
Mouse    69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKV 133

  Fly   127 TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDR 191
            ..:..:|||.:.|:   :.|....|||::|..:::| |||.|.:||..|:|...:|||....:|:
Mouse   134 VAVHLHQTVQVDDE---LEIKAYYAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK 194

  Fly   192 LQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKN 256
            . ||:||||::..|...:..:|.|:...:..:.:||...|.|||.|...||..||..:|:..|:.
Mouse   195 C-RPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWER 258

  Fly   257 KESGLMAY-SLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQ-LCHSLADVYK 319
            ....:..| |..|....::    :.|..|.|.:.|:.|.|  .:.|.|:||||: ...:.||   
Mouse   259 MNLKVPIYFSTGLTEKANH----YYKLFITWTNQKIRKTF--VQRNMFEFKHIKAFDRTFAD--- 314

  Fly   320 LPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVR 384
             ..||.||.|:...|.:|.:..:|.:||.|..|.:|:......||:..::           |..:
Mouse   315 -NPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKI-----------LSGQ 367

  Fly   385 RRVDLEGAELEEYLRTQGEKLNPLIVKPDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHHSGF 449
            |::::||                                                          
Mouse   368 RKLEMEG---------------------------------------------------------- 374

  Fly   450 FKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGIGAEQQ 514
                                                                             
Mouse   375 ----------------------------------------------------------------- 374

  Fly   515 ANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTA 579
                                  |:.:||..||:.:.|...:|.:.:::::.|..|..|:::||.|
Mouse   375 ----------------------RQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEA 417

  Fly   580 EGTQVVARHCEQNVGARVFTPQKGEI--------IDVTSEIHIYQVRLTEGLVSQLQFQK----- 631
            :..:.:.:..||......:.|..||.        |.|...:.:.:..:.:||:.:.:..:     
Mouse   418 KKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKREMVQGLLPEAKKPRLLHGT 482

  Fly   632 --GKDAEVAWVDG-----RLGMRVKAIEAP-----MDVTVEQDASVQ------------------ 666
              .||:....|..     .||:....:...     .|...||:.:::                  
Mouse   483 LIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLQDTRKEQETALRVYSHLKSTLKDHCVQHLP 547

  Fly   667 EG----KTLTLETLADDEIPIHNSVLIN----ELKLSDFKQTLMRNNI 706
            :|    :::.::..|..|.|....:|::    :.:|..|..||::|.:
Mouse   548 DGSVTVESILIQAAAHSEDPGTKVLLVSWTYQDEELGSFLTTLLKNGL 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf100NP_651658.1 CPSF2-like_MBL-fold 7..204 CDD:293851 61/204 (30%)
YSH1 19..400 CDD:224157 112/390 (29%)
Beta-Casp 243..369 CDD:214983 36/127 (28%)
RMMBL 538..577 CDD:284853 9/38 (24%)
CPSF100_C 617..753 CDD:290038 20/133 (15%)
Ints11NP_082296.1 YSH1 4..444 CDD:224157 132/610 (22%)
INTS11-like_MBL-fold 6..204 CDD:293849 61/202 (30%)
HXHXDH motif 68..73 1/4 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1236
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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