DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf100 and dclre1c

DIOPT Version :9

Sequence 1:NP_651658.1 Gene:Cpsf100 / 43426 FlyBaseID:FBgn0027873 Length:756 Species:Drosophila melanogaster
Sequence 2:XP_021330734.1 Gene:dclre1c / 566285 ZFINID:ZDB-GENE-041210-72 Length:680 Species:Danio rerio


Alignment Length:613 Identity:105/613 - (17%)
Similarity:183/613 - (29%) Gaps:207/613 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 TVSLKDKGYG----ISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQR 194
            ::||.|:..|    :.:|.|:|||..|..:: :.:..:..::|..||.                 
Zfish   133 SISLIDESTGETEDVVVTLLSAGHCPGSVMF-LFEGAKGTVLYTGDFR----------------- 179

  Fly   195 PSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA----------GRVLELA-- 247
              |.:.||...:|..:..|.:|       :|:|        .:||.          .|...||  
Zfish   180 --LAVGDAARMEYLHSGDRVKD-------IQSV--------YIDTTFFDPKYYQIPSREACLAGI 227

  Fly   248 HMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCH 312
            ..|.|.|              :....|:|:        |::.|....:|....|..|..:.|:..
Zfish   228 QQLVQDW--------------ICQSPYHVV--------WLNCKAAYGYEYLFTNLGQEFNSQIHV 270

  Fly   313 SLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGK 377
            :..|::|          ..|::....|.:...|                        :..|...|
Zfish   271 NSLDMFK----------KMPEILCHVTTNRATQ------------------------IHACRHPK 301

  Fly   378 QIELDVRRRVDLEGAELEEYLRT----------QGEKLNPLIVKPDVEEESSSESEDDIEMSVIT 432
            .                ||:.|.          .|..||.:.:||..           |.....|
Zfish   302 D----------------EEFFRANRLPCGSTAPDGIPLNIISIKPST-----------IWFGERT 339

  Fly   433 GKHDIVVRPEGRHHSGFFKSNKRHHVMFPYHEEKVKCDEY-GEIINLDDYRIADATGYEFVPMEE 496
            .|..:||:          ..:..:...|.:|...::..:: ..|..::.|......|.....:.|
Zfish   340 RKTSVVVK----------MGSSSYRACFSFHSSYLEVKDFLSYICPVNIYPNVIPLGKTVEDLTE 394

  Fly   497 QNKENVKKEEPGIGAEQQANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRIDFEGR-SDGESM 560
            ..|...:|.   .|.|            :::.||...:.:.:        :|...||. |||:..
Zfish   395 LLKPLCRKH---CGRE------------EIVYKPLGALKRTR--------KRSTSEGSDSDGDLF 436

  Fly   561 LKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVF-TPQKGEIIDVTSEIHIYQVRLTEGLV 624
            .::.:..|.|::.|    ::.|.|..|....:..|... ..|...:|.:....|      |...:
Zfish   437 EEVSTAPRRRKITV----SDLTTVAIRVRPHSANADSHDNDQTYSLIKLCPSAH------TSNYM 491

  Fly   625 SQLQFQKGKDAE--VAWVDGRLGMRVKAIEAPMDVTVEQDASVQEG------KTLTLETLADDEI 681
            ...:.....|.|  .|...........:.|.|.......|:|:...      |....|.:..|| 
Zfish   492 DCTESNDDDDDEDDAAEQTPAAAPPPSSTEKPCSKHTHSDSSLTSSTQPCWEKFFKAEVVLTDE- 555

  Fly   682 PIHNSVLINELKLSDFKQTLMRNNINSE 709
                    :||:.|...|||...|..|:
Zfish   556 --------SELENSQNTQTLSTENTASQ 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf100NP_651658.1 CPSF2-like_MBL-fold 7..204 CDD:293851 16/73 (22%)
YSH1 19..400 CDD:224157 46/281 (16%)
Beta-Casp 243..369 CDD:214983 18/127 (14%)
RMMBL 538..577 CDD:284853 9/39 (23%)
CPSF100_C 617..753 CDD:290038 20/101 (20%)
dclre1cXP_021330734.1 artemis-SNM1C-like_MBL-fold 1..212 CDD:293855 23/113 (20%)
DRMBL 280..384 CDD:311461 22/164 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1236
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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