DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf100 and ints11

DIOPT Version :9

Sequence 1:NP_651658.1 Gene:Cpsf100 / 43426 FlyBaseID:FBgn0027873 Length:756 Species:Drosophila melanogaster
Sequence 2:NP_001018457.1 Gene:ints11 / 553648 ZFINID:ZDB-GENE-050522-13 Length:598 Species:Danio rerio


Alignment Length:616 Identity:132/616 - (21%)
Similarity:230/616 - (37%) Gaps:181/616 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IKLHTISGAMDESPPCYILQIDDVRILLDCGW------DEKF-DANFIKELKRQVHTLDAVLLSH 62
            ||:..:....|....|.::.|....|:||||.      |.:| |.::|.:..|....||.|::||
Zfish     4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVIISH 68

  Fly    63 PDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDL-YMSHFNMGDFDLFSLDDVDTAFEKI 126
            ....|.|||||:...:|.:.|||.|.|...:..:.:.|. .::....|:.:.|:...:....:|:
Zfish    69 FHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKV 133

  Fly   127 TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDR 191
            ..|..:|||.:.|:   :.|....|||::|..:.:| |||.|.:||..|:|...:|||....:|:
Zfish   134 VPLNLHQTVQVDDE---LEIKAYYAGHVLGAAMVQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK 194

  Fly   192 LQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKN 256
            . ||.:||:::..|...:..:|.|:...:..:.:||...|.|||.|...||..||..:|:..|:.
Zfish   195 C-RPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWER 258

  Fly   257 KE-SGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQ-LCHSLADVYK 319
            .. ...:.:|..|....::    :.|..|.|.:.|:.|.|  .:.|.|:||||: ...|.||   
Zfish   259 MNLKAPIYFSTGLTEKANH----YYKLFITWTNQKIRKTF--VQRNMFEFKHIKAFDRSYAD--- 314

  Fly   320 LPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVR 384
             ..||.||.|:...|.:|.:..:|.:||.|..|.:|:......||:..::           |:.:
Zfish   315 -NPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQGTVGHKI-----------LNGQ 367

  Fly   385 RRVDLEGAELEEYLRTQGEKLNPLIVKPDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHHSGF 449
            :::::||                                                          
Zfish   368 KKLEMEG---------------------------------------------------------- 374

  Fly   450 FKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGIGAEQQ 514
                                                                             
Zfish   375 ----------------------------------------------------------------- 374

  Fly   515 ANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTA 579
                                  |.|::|..||:.:.|...:|.:.:::::....||.::::||.|
Zfish   375 ----------------------RATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEA 417

  Fly   580 EGTQVVARHCEQNVGARVFTPQKGEIIDVTS 610
            :..:.:....||......|.|..||...:.:
Zfish   418 KKMEFLKDKIEQEFSISCFMPANGETTTIVT 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf100NP_651658.1 CPSF2-like_MBL-fold 7..204 CDD:293851 61/204 (30%)
YSH1 19..400 CDD:224157 111/390 (28%)
Beta-Casp 243..369 CDD:214983 36/127 (28%)
RMMBL 538..577 CDD:284853 8/38 (21%)
CPSF100_C 617..753 CDD:290038
ints11NP_001018457.1 YSH1 4..442 CDD:224157 130/608 (21%)
INTS11-like_MBL-fold 6..204 CDD:293849 61/202 (30%)
HXHXDH motif 68..73 1/4 (25%)
Beta-Casp 245..363 CDD:214983 36/127 (28%)
RMMBL 377..416 CDD:284853 9/38 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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