DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf100 and cpsf2

DIOPT Version :9

Sequence 1:NP_651658.1 Gene:Cpsf100 / 43426 FlyBaseID:FBgn0027873 Length:756 Species:Drosophila melanogaster
Sequence 2:NP_001002384.1 Gene:cpsf2 / 436657 ZFINID:ZDB-GENE-040718-79 Length:790 Species:Danio rerio


Alignment Length:809 Identity:436/809 - (53%)
Similarity:565/809 - (69%) Gaps:72/809 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLLSHPDA 65
            |||||||..:||..:||..||:||:|:.|.||||||||.|..:.|..|||.||.:|||||||||.
Zfish     1 MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDETFSMDIIDSLKRYVHQVDAVLLSHPDH 65

  Fly    66 YHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVDTAFEKITQLK 130
            .|||||||.||||||||.|||||||:|||||||||||.|..|..||.||:|||||:||:||.|||
Zfish    66 VHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDSAFDKIQQLK 130

  Fly   131 YNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRP 195
            |:|.|:||.||:|:|||||.||||||||||||||.|||:|:|..|||||:|.||:||.|:.|.||
Zfish   131 YSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYGVDFNHKREIHLNGCSLESLSRP 195

  Fly   196 SLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKNKESG 260
            ||||||::||.|.|.||:.|||:|:||:::|:|.:|||||||||||||||||.:|||:|:.|::|
Zfish   196 SLLITDSFNASYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAG 260

  Fly   261 LMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYKLPAGPK 325
            |..|||||||||||||:||:|||:|||||||.:.||..|||||||:|:.|||||:|:.::|: ||
Zfish   261 LGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHSLSDLARVPS-PK 324

  Fly   326 VVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPG-KQIELDVRRRVDL 389
            |||.|.|||||||:|:||:||..:|.||:|||.||:|||||..|::|  || |:|||::|:|..|
Zfish   325 VVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTTPGTLARYLIDN--PGEKRIELEIRKRCRL 387

  Fly   390 EGAELEEYL---RTQGEKLNPLIVKPDVEEESSSES--EDDIEMSVI--TGKHDIVVRPEGRHHS 447
            ||.|||||:   |.:.|....|....:|:.:||.||  |||:|...:  |..||::::.||....
Zfish   388 EGRELEEYMEKERMKKEAAKKLEQAKEVDLDSSDESDMEDDLEQPAVVKTKHHDLMMKGEGGRKG 452

  Fly   448 GFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGIGAE 512
            ||||..|:.:.|||.|||::|.|||||||..:|:         .||..:..:|...|.|.|:   
Zfish   453 GFFKQAKKSYSMFPTHEERIKWDEYGEIIRPEDF---------LVPELQATEEEKSKLESGL--- 505

  Fly   513 QQANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHG 577
               ..|....:..|.:.|||..|..:|:::.|:|..||:||||||:|:.||::|::||::|::||
Zfish   506 ---TNGEEPMEQDLSDVPTKCTSTTQTLDIRARVMYIDYEGRSDGDSIKKIINQMKPRQLIIVHG 567

  Fly   578 TAEGTQVVARHCEQNVG--ARVFTPQKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWV 640
            ..:.:|.:|..|:...|  .:|:.|:..|.:|.|||.|||||||.:.|||.|||.|.:|.|:||:
Zfish   568 PPDASQDLAESCKAYSGKDIKVYIPKLQETVDATSETHIYQVRLKDSLVSSLQFCKARDTELAWI 632

  Fly   641 DGRLGMRVKAI-------------------EAPMDVTVEQD--------ASVQEGKTL------- 671
            ||.|.|||:.:                   |..|:||.|.:        |:.:..|||       
Zfish   633 DGVLDMRVEKVDTGVIVELGEAKDEAEEGGEQGMEVTEELNTEPSTAAAANQRAMKTLFGEDEKE 697

  Fly   672 ---------TLETLADDEIPIHNSVLINELKLSDFKQTLMRNNINSEFSGGVLWCSNGTLALRRV 727
                     |||.|...|:|.|.||.|||.:||||||.|:|..|.:||.||||.|:| .:|:||.
Zfish   698 ISEESDVIPTLEPLPAHEVPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNN-LVAVRRT 761

  Fly   728 DAGKVAMEGCLSEEYYKIRELLYEQYAIV 756
            :||::.:|||..::||:||||||||||:|
Zfish   762 EAGRICLEGCHCDDYYRIRELLYEQYAVV 790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf100NP_651658.1 CPSF2-like_MBL-fold 7..204 CDD:293851 138/196 (70%)
YSH1 19..400 CDD:224157 262/384 (68%)
Beta-Casp 243..369 CDD:214983 85/125 (68%)
RMMBL 538..577 CDD:284853 18/38 (47%)
CPSF100_C 617..753 CDD:290038 75/178 (42%)
cpsf2NP_001002384.1 YSH1 5..430 CDD:224157 280/427 (66%)
CPSF2-like_MBL-fold 7..204 CDD:293851 138/196 (70%)
Beta-Casp 243..368 CDD:214983 85/125 (68%)
RMMBL 528..567 CDD:284853 18/38 (47%)
CPSF100_C 609..787 CDD:290038 75/178 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580926
Domainoid 1 1.000 272 1.000 Domainoid score I1768
eggNOG 1 0.900 - - E1_COG1236
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6460
Inparanoid 1 1.050 826 1.000 Inparanoid score I448
OMA 1 1.010 - - QHG53972
OrthoDB 1 1.010 - - D129179at33208
OrthoFinder 1 1.000 - - FOG0005213
OrthoInspector 1 1.000 - - oto40356
orthoMCL 1 0.900 - - OOG6_103283
Panther 1 1.100 - - LDO PTHR45922
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R191
SonicParanoid 1 1.000 - - X3727
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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