DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf100 and Cpsf73

DIOPT Version :9

Sequence 1:NP_651658.1 Gene:Cpsf100 / 43426 FlyBaseID:FBgn0027873 Length:756 Species:Drosophila melanogaster
Sequence 2:NP_650738.1 Gene:Cpsf73 / 42240 FlyBaseID:FBgn0261065 Length:684 Species:Drosophila melanogaster


Alignment Length:806 Identity:155/806 - (19%)
Similarity:295/806 - (36%) Gaps:257/806 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWD---EKFDANFIKELKRQVHTLDAVLLSHP 63
            :.::::..:....:....|.:|:....:|:||||..   ...||....:| .:...:|.:.:||.
  Fly    15 SDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDL-IEADEIDLLFISHF 78

  Fly    64 DAYHLGALPYLVGKLGL--NC-PIYATIPVFKMGQMFMYDLYMSHFNMG-DFDLFSLDDVDTAFE 124
            ...|.||||:.:.|...  .| ..:||..:::    :|...|:...|:. :..|::..|::.:.|
  Fly    79 HLDHCGALPWFLMKTSFKGRCFMTHATKAIYR----WMLSDYIKISNISTEQMLYTEADLEASME 139

  Fly   125 KITQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCEL 189
            ||..:.:::...:    .|:......|||::|..:: ::::....|:|..||:.:::|||...|:
  Fly   140 KIETINFHEERDV----MGVRFCAYIAGHVLGAAMF-MIEIAGIKILYTGDFSRQEDRHLMAAEV 199

  Fly   190 DRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLW 254
            ..: :|.:|||::....:...:|..|:.:..:.:.:.|:..|..||.|...||..||..:||:.|
  Fly   200 PPM-KPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEFW 263

  Fly   255 KNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYK 319
             ::...|....:...::::...:...::.|..|:|::.:..  |.||||.|:||.....: |.::
  Fly   264 -SQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQI--AVNNPFVFRHISNLKGI-DHFE 324

  Fly   320 LPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVR 384
             ..||.|::||...::||.:|:||..|.::..|.:|:......||||..::              
  Fly   325 -DIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAVL-------------- 374

  Fly   385 RRVDLEGAELEEYLRTQGEKLNPLIVKPDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHHSGF 449
                   :|.||.....|:|| ||                                         
  Fly   375 -------SEPEEITTLSGQKL-PL----------------------------------------- 390

  Fly   450 FKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGIGAEQQ 514
                                                                             
  Fly   391 ----------------------------------------------------------------- 390

  Fly   515 ANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTA 579
                                        |..|..|.|...:|.:...:.:..|:|..|:::||  
  Fly   391 ----------------------------NMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHG-- 425

  Fly   580 EGTQVVARHCEQNVGARV-FTPQKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEV------ 637
                      |||..:|: ...|:....|.:::|..|..|.|..:  .|.|:..|.|:|      
  Fly   426 ----------EQNEMSRLKLALQREYEADASTDIKFYNPRNTHAV--DLYFRGEKTAKVMGSLAA 478

  Fly   638 --AWVDGRL-GMRVKA-----IEAPMDV---------TVEQDASVQEGKTL-TLETLADD----- 679
              :.|..:| |:.||.     :.||.|:         .|.|..|:..|.:| |||.|.|.     
  Fly   479 KNSEVGSKLSGVLVKRDFKYHLLAPSDLGKYTDMSMSVVTQRQSIPWGSSLSTLELLLDRIGAGC 543

  Fly   680 ----------------EIPIHNSVLINELKLSDFKQTLMRNNINSEFSGGVLWCSNGTLALRRVD 728
                            |:.:...:::.|.:.:         ::|..::..||.|      :.:.:
  Fly   544 VEVLEAERKLRVFGCIELTVEQKIIVMEWQAT---------HVNDVYADAVLAC------IMQSE 593

  Fly   729 AGKVAMEGCLSE---EYYKIRELLYE 751
            .|...::|...:   |..:.||.|.|
  Fly   594 LGGTNLKGATKQTKSEDSRFRECLIE 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf100NP_651658.1 CPSF2-like_MBL-fold 7..204 CDD:293851 47/203 (23%)
YSH1 19..400 CDD:224157 94/387 (24%)
Beta-Casp 243..369 CDD:214983 35/125 (28%)
RMMBL 538..577 CDD:284853 8/38 (21%)
CPSF100_C 617..753 CDD:290038 38/183 (21%)
Cpsf73NP_650738.1 YSH1 18..456 CDD:224157 117/621 (19%)
CPSF3-like_MBL-fold 18..211 CDD:293850 47/203 (23%)
Beta-Casp 252..373 CDD:214983 35/125 (28%)
RMMBL 386..426 CDD:284853 14/186 (8%)
CPSF73-100_C 483..683 CDD:215023 31/152 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440179
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1236
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D21254at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.750

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