DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf100 and IntS9

DIOPT Version :9

Sequence 1:NP_651658.1 Gene:Cpsf100 / 43426 FlyBaseID:FBgn0027873 Length:756 Species:Drosophila melanogaster
Sequence 2:NP_648838.3 Gene:IntS9 / 39763 FlyBaseID:FBgn0036570 Length:654 Species:Drosophila melanogaster


Alignment Length:726 Identity:151/726 - (20%)
Similarity:247/726 - (34%) Gaps:269/726 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIK----------------------- 46
            ::|:.:||  |.:.||||:....:||:||||..|:...||:.                       
  Fly     1 MRLYCLSG--DLAKPCYIITFKGLRIMLDCGLTEQTVLNFLPLPFVQSLKWSNLPNFVPSRDHDP 63

  Fly    47 ----ELK---------------------RQVHTLDAVLLSHPDAYHLGALPYLVGKLGLNCPIYA 86
                |||                     .....:|.:|:|  :..::.||||:....|....:||
  Fly    64 QMDGELKDCCGRVFVDSTPEFNLPMDKMLDFSEVDVILIS--NYLNMLALPYITENTGFKGKVYA 126

  Fly    87 TIPVFKMGQMFMYDL--YMS---------------HFNMGDFD----------LFSLDDVDTAFE 124
            |.|..::|:.|:.:|  |:.               |.......          :|||.||..:..
  Fly   127 TEPTLQIGRFFLEELVDYIEVSPKACTARLWKEKLHLLPSPLSEAFRAKKWRTIFSLKDVQGSLS 191

  Fly   125 KITQLKYNQTVSLKDKGYGISI-TPLNAGHMIGGTIWKIVKVGEEDIVY----ATDFNHKKERHL 184
            |:|.:.|::.:.:    .|..| ||:::|:.:|.:.| ::....|.|.|    :|...|.:..:.
  Fly   192 KVTIMGYDEKLDI----LGAFIATPVSSGYCLGSSNW-VLSTAHEKICYVSGSSTLTTHPRPINQ 251

  Fly   185 SGCELDRLQRPSLLITDAYNAQYQQARRRARDEK---LMTNILQTVRNNGNVLIAVDTAGRVLEL 246
            |.     |:...:||.....    ||.....|.|   |..|:..|:||||:.||....:|.|.:|
  Fly   252 SA-----LKHADVLIMTGLT----QAPTVNPDTKLGELCMNVALTIRNNGSALIPCYPSGVVYDL 307

  Fly   247 AHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMS-----------DKLTKAFEGARN 300
            ...|.|..:|  :||....:..::.|:.:.:.::....||:|           |....||. .||
  Fly   308 FECLTQNLEN--AGLNNVPMFFISPVADSSLAYSNILAEWLSSAKQNKVYLPDDPFPHAFY-LRN 369

  Fly   301 NPFQFKHIQLCHSLADVY-KLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSP-- 362
            |  :.||..  |..::.: |....|.||....|.|..|........|.:|.|||||.|....|  
  Fly   370 N--KLKHYN--HVFSEGFSKDFRQPCVVFCGHPSLRFGDAVHFIEMWGNNPNNSIIFTEPDFPYL 430

  Fly   363 ------GTLAM-----------------ELVENCAP----------------------------- 375
                  ..|||                 :|::...|                             
  Fly   431 QVLAPFQPLAMKAFYCPIDTSLNYQQANKLIKELKPNVLVIPEAYTKPHPSAPNLFIEQPDKKII 495

  Fly   376 ----GKQIELDVRRRVDLEGAELEEYLRTQ-GEKLNPLIVKPDVEEESSSESEDDIEMSVITGKH 435
                |:.|.|.::|::|      ..|:.:: .:|::|            .|....:..|.:||..
  Fly   496 TFKCGEIIRLPLKRKLD------RIYITSELAQKISP------------KEVAAGVTFSTLTGVL 542

  Fly   436 DIVVRPEGRHHSGFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFV-----PME 495
            .:                          ::||.|.:          ..||:...|.:     |.:
  Fly   543 QV--------------------------KDKVHCIQ----------PCADSVKDETISSNSAPTK 571

  Fly   496 EQNKENVKKEEPGIGAEQ---------------QANGGIV--------------DNDVQLL--EK 529
            |...:|||.|...|..:.               ...||.:              ||:..::  .|
  Fly   572 EDVLKNVKYEYGSIDVDAVMKKLAQDGFSNIKLDRTGGALTLNLVNEDTVIKFEDNETHIICGGK 636

  Fly   530 PTKLISQRKTI 540
            ||..:..|.||
  Fly   637 PTTRLKLRDTI 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf100NP_651658.1 CPSF2-like_MBL-fold 7..204 CDD:293851 61/276 (22%)
YSH1 19..400 CDD:224157 118/533 (22%)
Beta-Casp 243..369 CDD:214983 39/162 (24%)
RMMBL 538..577 CDD:284853 2/3 (67%)
CPSF100_C 617..753 CDD:290038
IntS9NP_648838.3 metallo-hydrolase-like_MBL-fold 1..264 CDD:304873 61/276 (22%)
Beta-Casp 304..428 CDD:214983 35/130 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440175
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1236
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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