DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf100 and pot-2

DIOPT Version :9

Sequence 1:NP_651658.1 Gene:Cpsf100 / 43426 FlyBaseID:FBgn0027873 Length:756 Species:Drosophila melanogaster
Sequence 2:NP_497017.1 Gene:pot-2 / 175110 WormBaseID:WBGene00010195 Length:251 Species:Caenorhabditis elegans


Alignment Length:93 Identity:23/93 - (24%)
Similarity:38/93 - (40%) Gaps:16/93 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 DLYMSH------FNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKDKGY--GISITPLNAGHMIG 156
            |:|..|      .|.|||  .::.:|..|..:.|::   |.:......|  ||:..|::..|...
 Worm   102 DVYDDHRDGLKNLNSGDF--VAIQNVHAASTRQTEM---QVLHGGGASYQRGITTVPVDFEHEAF 161

  Fly   157 GTIWKIVKVGEEDIVY---ATDFNHKKE 181
            ....|.|:...|.:.|   .|:|...:|
 Worm   162 QNFKKKVEAVLETVAYDENFTEFQQPEE 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf100NP_651658.1 CPSF2-like_MBL-fold 7..204 CDD:293851 23/93 (25%)
YSH1 19..400 CDD:224157 23/93 (25%)
Beta-Casp 243..369 CDD:214983
RMMBL 538..577 CDD:284853
CPSF100_C 617..753 CDD:290038
pot-2NP_497017.1 POT1PC 19..174 CDD:374726 18/76 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1236
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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