DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssl2 and Apmap

DIOPT Version :10

Sequence 1:NP_651656.2 Gene:Ssl2 / 43424 FlyBaseID:FBgn0041780 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_001385894.1 Gene:Apmap / 366227 RGDID:1308874 Length:415 Species:Rattus norvegicus


Alignment Length:413 Identity:135/413 - (32%)
Similarity:216/413 - (52%) Gaps:50/413 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGFLAALLKTSLFLVLFLGSLFLLPVLYPSTTFPFEQYFIKPARDLNGTLELNNHLNGARKLWKD 65
            |.||  :|..||.:.| ||::.||.......:|.|     |....:.|.|:.|..|..|.:|:::
  Rat    40 MTFL--MLAVSLAIPL-LGAMMLLESPIDPQSFSF-----KEPPFMFGVLQPNTKLRQAERLFEN 96

  Fly    66 QIFGPECLIVLEDKIYTGIHSGEVIRLNNEESVQPITKIGQ-PCDYIFDDELCGYPVGLALDTQG 129
            |:.|||.::.:.|.::||...|.|::|.|.| ::.|.:.|. ||....|:..||.|:|:.:...|
  Rat    97 QLNGPESIVNIGDVLFTGTADGRVVKLENGE-IETIARFGSGPCKTRDDEPTCGRPLGIRVGPNG 160

  Fly   130 NNLIVSDAYYGIWQVDLETKKKTVLVPAEQILPGKGANRRAKLFNSLVISRQG-DIFWTDSFSE- 192
             .|.|.|||.|:::|:.:.:...:|:.:|..:.||    :....|.|.|:|.| .|::|||.|: 
  Rat   161 -TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGK----KMSFVNDLTITRDGRKIYFTDSSSKW 220

  Fly   193 ---DFVFAAF-ANPSGRLFRYDRVKKTNEVLLDELSFANGLALSPSEDFIILAETTAMRLRRYYL 253
               |::.... ....|||..||.|.|..:||||:|.|.||:.|||.|||:::|||...|:||.|:
  Rat   221 QRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYV 285

  Fly   254 KGSRAGESEVFVEGLPGCPDNL-TADEEGIWVPLSVASDSQNPNLFAVLAPYPRLRSFLARLVAL 317
            .|...|.:::|||.:||.|||: .:...|.||  :.|:...||. |::|       .||:....:
  Rat   286 SGLMKGGADMFVENMPGFPDNIRPSSSGGYWV--AAATIRANPG-FSML-------DFLSDKPFI 340

  Fly   318 MRLPLRVLNHIYPNDIAARLFHSFN-DLVIRNAPKRSTVVRVDWNGNIVRSLHGFD-RSASGISH 380
            .|:                :|..|: :.|::..|:.|.|:.|..:|...||||..| :..:.:|.
  Rat   341 KRM----------------IFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSE 389

  Fly   381 VLEVKGHLYLGSPFNHYVAKVKL 403
            ..|..|:|||||..:.::.::.|
  Rat   390 AHEHDGYLYLGSFRSPFICRLSL 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ssl2NP_651656.2 YvrE 61..>284 CDD:442613 84/230 (37%)
ApmapNP_001385894.1 YvrE 92..>319 CDD:442613 86/234 (37%)
Str_synth 200..287 CDD:354965 39/86 (45%)

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