DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ssl2 and apmap

DIOPT Version :9

Sequence 1:NP_651656.2 Gene:Ssl2 / 43424 FlyBaseID:FBgn0041780 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_997773.1 Gene:apmap / 266637 ZFINID:ZDB-GENE-020919-1 Length:415 Species:Danio rerio


Alignment Length:411 Identity:122/411 - (29%)
Similarity:196/411 - (47%) Gaps:56/411 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TSLFLVLFLGSLFLLPVLYPSTTFPFEQYFIKPARDLN------GTLELNNHLNGARKLWKDQIF 68
            |.|.:|.||    |||:|.  ..|..|.........||      |..|.|..|..|.:|:::::.
Zfish    41 TLLTMVAFL----LLPLLV--VVFVLESPIQPEVFSLNEPPLMTGCYEPNLKLRQAERLFEERLV 99

  Fly    69 GPECLIVLEDKIYTGIHSGEVIRLNNEESVQPITKIGQ-PCDYIFDDELCGYPVGLALDTQGNNL 132
            |||.|..:.|..|||...|:::::.. .::..:..||: ||.....:..||.|:|:.:...| .|
Zfish   100 GPESLANIGDVFYTGTADGKIVKIEG-RNIHVLATIGKPPCGSREHEHTCGRPLGIRVGPNG-TL 162

  Fly   133 IVSDAYYGIWQVDLETKKKTVLVPAEQILPGKGANRRAKLFNSLVISRQG-DIFWTDSFS----E 192
            .|:|||.|:::|:..|.:...||..|:.:.|    ||....|.|.:::.| .:::|||.|    .
Zfish   163 FVADAYLGLFEVNPVTGEVKSLVSTEKRIAG----RRLGFVNDLDVTQDGKKVYFTDSSSRWQRR 223

  Fly   193 DFVFAAF-ANPSGRLFRYDRVKKTNEVLLDELSFANGLALSPSEDFIILAETTAMRLRRYYLKGS 256
            ||:.... |...||:..||...|...|:::.|.|.||:.|.|.|:.:::||||..|::|.::.|.
Zfish   224 DFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGL 288

  Fly   257 RAGESEVFVEGLPGCPDNL-TADEEGIWVPLSVASDSQNPNLFAVLAPYPRLRSFLARLVALMRL 320
            ..|..:.|:|.|||.|||: .:...|.||.:|....:...::...|:..|.|:..:.:|.:    
Zfish   289 NKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIFKLFS---- 349

  Fly   321 PLRVLNHIYPNDIAARLFHSFNDLVIRNAPKRSTVVRVDWNGNIVRSLH---GFDRSASGISHVL 382
                                 .|.:::..|:.|.||.:..:|..|||.|   |...:.|..:|  
Zfish   350 ---------------------QDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAH-- 391

  Fly   383 EVKGHLYLGSPFNHYVAKVKL 403
            |..|||||||..:.|:.|:.|
Zfish   392 EYSGHLYLGSFRSPYLCKLDL 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ssl2NP_651656.2 YvrE 80..>284 CDD:225921 67/211 (32%)
Str_synth 174..256 CDD:304606 29/87 (33%)
apmapNP_997773.1 YvrE 73..>319 CDD:225921 80/251 (32%)
NHL 108..>281 CDD:302697 56/178 (31%)
NHL repeat 151..189 CDD:271320 13/38 (34%)
NHL repeat 196..252 CDD:271320 16/55 (29%)
Str_synth 200..287 CDD:304606 29/86 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596676
Domainoid 1 1.000 86 1.000 Domainoid score I8045
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 165 1.000 Inparanoid score I4163
OMA 1 1.010 - - QHG48544
OrthoDB 1 1.010 - - D336287at33208
OrthoFinder 1 1.000 - - FOG0001350
OrthoInspector 1 1.000 - - mtm6391
orthoMCL 1 0.900 - - OOG6_101875
Panther 1 1.100 - - O PTHR10426
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3581
SonicParanoid 1 1.000 - - X608
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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