DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-gamma and lsamp

DIOPT Version :9

Sequence 1:NP_651649.1 Gene:DIP-gamma / 43417 FlyBaseID:FBgn0039617 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001034921.1 Gene:lsamp / 664692 ZFINID:ZDB-GENE-090108-1 Length:333 Species:Danio rerio


Alignment Length:321 Identity:97/321 - (30%)
Similarity:141/321 - (43%) Gaps:55/321 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 NNVTYPAGREAILACSVRNLGKNKVGWLRASDQTVLALQGRVVTHNARISVMHQDMHTWKLKISK 110
            :|:|...|...::.|.|.: ..:||.||..|: .:.|.:.: .:.:.|:.::.|....:.|:|.|
Zfish    35 DNITIRQGDTTVIRCYVDD-KVSKVAWLNRSN-IIFAGEDK-WSLDPRVELVTQGQLEYSLRIQK 96

  Fly   111 LRESDRGCYMCQINTSPMKK--QVGCIDVQVPPDIINEESSADLAVQEGEDATLTCKATGNPQPR 173
            :...|.|.|.|.|.|....|  ||..| ||||..|.  :.|.|:.|.||.:..|||.|.|.|.|.
Zfish    97 VDVFDEGPYTCSIQTKQQSKTSQVYLI-VQVPAIIY--KVSEDITVNEGSNVALTCLANGRPDPA 158

  Fly   174 VTWRREDGEMILIRKPGSRELMKVESYNGSSLRLLRLERRQMGAYLCIASNDVPPAVSKRVSLSV 238
            :|||        :..| |.|.:.|..|    |.:..:.|.|.|.|.|.|||||.....|.|::.|
Zfish   159 ITWR--------LLNP-SAEALDVGEY----LEISGVVRSQAGRYECKASNDVSTPDVKYVNVVV 210

  Fly   239 QFAPMVR--APSQLLGTPLGSDVQLECQVEASPSPVSYWLKGARTSNGFASVSTASLESGSPGPE 301
            .:.|.::  ..|:   |.:|....|.|:..|.|.|...|.:..|..:...|              
Zfish   211 NYPPYIKDVRSSE---TAVGQAGVLHCEASAVPQPEFEWYRDERRLSSSQS-------------- 258

  Fly   302 MLLDGPKYGITERRDGYRGVMLLVVRSFSPSDVGTYHCVSTNSLGRAEGTLRLYEIKLHPG 362
                     :|.:..|.|.|  |||.:.:..|.|.|.||:||.||....::.||:    ||
Zfish   259 ---------LTIQVSGSRTV--LVVANVTEEDYGNYTCVATNRLGVHNASVFLYK----PG 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-gammaNP_651649.1 IG_like 47..139 CDD:214653 27/93 (29%)
Ig 47..129 CDD:299845 22/81 (27%)
Ig 140..238 CDD:299845 35/97 (36%)
IG_like 247..355 CDD:214653 27/107 (25%)
Ig 256..351 CDD:299845 25/94 (27%)
lsampNP_001034921.1 Ig 34..124 CDD:299845 26/92 (28%)
IG_like 36..124 CDD:214653 26/91 (29%)
IG_like 134..197 CDD:214653 28/75 (37%)
IGc2 141..199 CDD:197706 27/70 (39%)
I-set 213..300 CDD:254352 28/114 (25%)
Ig 231..298 CDD:143165 24/91 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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