DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-gamma and paplna

DIOPT Version :9

Sequence 1:NP_651649.1 Gene:DIP-gamma / 43417 FlyBaseID:FBgn0039617 Length:413 Species:Drosophila melanogaster
Sequence 2:XP_005169942.1 Gene:paplna / 562930 ZFINID:ZDB-GENE-070815-4 Length:1187 Species:Danio rerio


Alignment Length:252 Identity:62/252 - (24%)
Similarity:93/252 - (36%) Gaps:62/252 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SGSTQNQHHESSSQLDPDPEFIGFIN---NVTYP------AGREAILACS---VRNLGKNKVGWL 73
            |||:||  :...|::|....:....:   |:.|.      ||:.|.|.||   |..:....:.|.
Zfish   921 SGSSQN--NAGISEVDSSQSYTSQSSSRFNIDYSPLVEARAGQTAKLQCSVLPVSAIHAVTIHWS 983

  Fly    74 RASDQTVLALQGRVVTHNARISVMHQDMHTWKLKISKLRESDRGCYMCQINTSPMKKQVGCIDVQ 138
            ||         |:.:.     |:.|.......|.|.:|...|.|.|.|.: |...|.:...:.::
Zfish   984 RA---------GQPLN-----SLRHSQHSDGTLVIKQLTADDSGLYTCTV-TDAQKFEERQVQLR 1033

  Fly   139 VPPDIINEESSADLAVQEGEDATLTCKATGNPQPRVTWRRE------DGEMILIRKPGSRELMKV 197
            |..|:...::..|:.|.:|..|.|.|..||. ...|.|.|.      ||..:.:...|:..|..|
Zfish  1034 VLGDLRITKAPIDVDVVQGSTAQLACVVTGE-NVNVGWSRNGVPVRPDGHRVHVSADGTLILNNV 1097

  Fly   198 ESYNGSSLRLLRLERRQMGAYLCIASNDVPPAVSKRVSLSVQFAPMVRAPSQLLGTP 254
            :|.:             .|.|.|.|...         :|||..|..:|    |..||
Zfish  1098 QSVD-------------EGTYTCNAYTG---------TLSVSAAAEIR----LAKTP 1128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-gammaNP_651649.1 IG_like 47..139 CDD:214653 24/100 (24%)
Ig 47..129 CDD:299845 23/90 (26%)
Ig 140..238 CDD:299845 23/103 (22%)
IG_like 247..355 CDD:214653 3/8 (38%)
Ig 256..351 CDD:299845
paplnaXP_005169942.1 TSP1 24..75 CDD:214559
ADAM_spacer1 181..293 CDD:310520
TSP1 303..356 CDD:214559
TSP1 388..442 CDD:214559
TSP1 449..498 CDD:214559
TSP1 504..557 CDD:214559
KU 720..771 CDD:238057
Ig_3 839..906 CDD:316449
IGc2 960..1022 CDD:197706 20/76 (26%)
I-set 1039..1121 CDD:333254 25/104 (24%)
PLAC 1142..1173 CDD:312271
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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