DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-gamma and itgb4

DIOPT Version :9

Sequence 1:NP_651649.1 Gene:DIP-gamma / 43417 FlyBaseID:FBgn0039617 Length:413 Species:Drosophila melanogaster
Sequence 2:XP_005166847.1 Gene:itgb4 / 335269 ZFINID:ZDB-GENE-030131-7209 Length:1931 Species:Danio rerio


Alignment Length:227 Identity:44/227 - (19%)
Similarity:74/227 - (32%) Gaps:74/227 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 ATLTCKATGNPQPRVTWR-----------------REDGEMILIRKPGSRELMKVESYNGSSLRL 207
            |.:...|||....|:.|:                 .||....:..|....||..::.|....:|:
Zfish  1243 ANIKAVATGPKNIRLNWKPSQNANGYKVKYWIYGDPEDKAKFMDVKTPQAELTNLDPYCDYEMRV 1307

  Fly   208 LRLERRQMGAY----LCIASNDVP--PAVSKRVSLSVQFAPMVRAPSQLLGTPLGSDVQLECQVE 266
            ........|.|    .|....|:|  |.   |::.:| .:|.|...|                  
Zfish  1308 CGYNALGDGNYSDIIQCQT
LEDIPGEPG---RLAFNV-ISPTVTQVS------------------ 1350

  Fly   267 ASPSPVSYWLKGARTS---NGFASVSTASLESGSP-GP--EMLLDGPKYGITERRDGYRGVMLLV 325
                    |.:.|..:   .|:..:.....|...| ||  ::::|.||     :|       :|:
Zfish  1351 --------WAEPAEANGIITGYEVIYMPINEDKKPTGPPKKVMIDNPK-----KR-------MLL 1395

  Fly   326 VRSFSPSDVGTYHCVSTNSLG---RAEGTLRL 354
            :.:..||....|...::|.:|   ..|.|:.|
Zfish  1396 IENLQPSQTYCYKVRASNKVGWGPYREATINL 1427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-gammaNP_651649.1 IG_like 47..139 CDD:214653
Ig 47..129 CDD:299845
Ig 140..238 CDD:299845 20/100 (20%)
IG_like 247..355 CDD:214653 21/117 (18%)
Ig 256..351 CDD:299845 18/103 (17%)
itgb4XP_005166847.1 Integrin_beta 37..457 CDD:278776
EGF_2 <468..490 CDD:285248
EGF_2 545..573 CDD:285248
Integrin_B_tail 625..709 CDD:285239
Calx-beta 991..1064 CDD:295344
FN3 1242..1326 CDD:238020 16/82 (20%)
FN3 1331..1420 CDD:238020 24/130 (18%)
fn3 1640..1720 CDD:278470
fn3 1751..1835 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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