DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-gamma and rst

DIOPT Version :9

Sequence 1:NP_651649.1 Gene:DIP-gamma / 43417 FlyBaseID:FBgn0039617 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster


Alignment Length:387 Identity:84/387 - (21%)
Similarity:132/387 - (34%) Gaps:107/387 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ILIMATKCGS------GSTQNQHHESSSQLDPDPEFIGFINNVTYPAGREAILACSVRNLGKNKV 70
            :|::||..|.      .|.|||..    .::|..:        |...|....|.|.|    .||.
  Fly     7 LLLLATIVGMVRSSPYTSYQNQRF----AMEPQDQ--------TAVVGARVTLPCRV----INKQ 55

  Fly    71 GWLRASDQTVLALQGRVVTHNARISVMHQDMH-TWKLKISKLRESDRGCYMCQINTSP-----MK 129
            |.|:.:.........|.::...|.:::..|.. .:.|.|..:...|...|.||::..|     ::
  Fly    56 GTLQWTKDDFGLGTSRDLSGFERYAMVGSDEEGDYSLDIYPVMLDDDARYQCQVSPGPEGQPAIR 120

  Fly   130 KQVGCIDVQVPPDIINEESSADLAVQEGEDATLTCKAT-GNPQPRVTWRREDG---------EMI 184
            .....:.|.|||:.........:...|.....:.|.:. |.|...:||  .||         |..
  Fly   121 STFAGLTVLVPPEAPKITQGDVIYATEDRKVEIECVSVGGKPAAEITW--IDGLGNVLTDNIEYT 183

  Fly   185 LIRKPGSRELMKVESYNGSSLRLLRLERRQMGAYLCIASNDVPPAV-SKRVSLSVQFAPMVRAPS 248
            :|..|..|....     .|.|||...:......:.|.|.|...... |.::.:.|::||.|:.  
  Fly   184 VIPLPDQRRFTA-----KSVLRLTPKKEHHNTNFSCQAQNTADRTYRSAKIRVEVKYAPKVKV-- 241

  Fly   249 QLLGTPLG-------------------------SDVQLECQVEASPSPVSY-WLKGARTSNGFAS 287
            .::|:..|                         |.|:|||:.:|:||.|.| |.           
  Fly   242 NVMGSLPGGAGGSVGGAGGGSVHMSTGSRIVEHSQVRLECRADANPSDVRYRWF----------- 295

  Fly   288 VSTASLESGSPGPEMLLDGPKYGITERRDGYRGVMLLVVRSFSPSDVGTYHCVSTNSLGRAE 349
                      ...|.::.|.|   ||.      |:..|.|.|..:.|   .|...||:|::|
  Fly   296 ----------INDEPIIGGQK---TEM------VIRNVTRKFHDAIV---KCEVQNSVGKSE 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-gammaNP_651649.1 IG_like 47..139 CDD:214653 20/97 (21%)
Ig 47..129 CDD:299845 19/87 (22%)
Ig 140..238 CDD:299845 22/108 (20%)
IG_like 247..355 CDD:214653 28/129 (22%)
Ig 256..351 CDD:299845 27/120 (23%)
rstNP_001284835.1 IG_like 34..130 CDD:214653 21/107 (20%)
Ig 42..114 CDD:299845 17/75 (23%)
C2-set_2 135..225 CDD:285423 19/96 (20%)
Ig_3 265..329 CDD:290638 22/96 (23%)
I-set 346..420 CDD:254352
Ig 360..425 CDD:299845
Ig5_KIRREL3-like 428..524 CDD:143235
IG_like 435..524 CDD:214653
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.