DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-gamma and Dscam4

DIOPT Version :9

Sequence 1:NP_651649.1 Gene:DIP-gamma / 43417 FlyBaseID:FBgn0039617 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster


Alignment Length:365 Identity:74/365 - (20%)
Similarity:137/365 - (37%) Gaps:90/365 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SSSQLDPDPEFIGFINN------------VTYP-------------AGREAILACSVRNLGKNKV 70
            :.::|:...:::.::||            ||.|             ..::|...|.|.....:.|
  Fly   297 TKARLEDSGKYLCWVNNTAGEETIQVSLTVTAPLTAHLQPQVQTVDVDKDAQFQCIVSGHPVHDV 361

  Fly    71 GWLRASDQTVLALQGRVVTHNARISVMHQDMHTWKLKISKLRESDRGCYMCQINT------SPMK 129
            .||.         .|:.:..:.|:.::....   :|.|.|:::.|.|.|.|.::.      |..:
  Fly   362 NWLH---------DGKPILRDNRVEILTDPP---RLIIKKVQKEDPGMYQCFVSNEWEQIQSTAE 414

  Fly   130 KQVGCIDVQVPPDIINEESSADLAVQEGEDATLTCKATGNPQPRVTWRRE-----DGEMILIRKP 189
            .|:|    ...|:::...|...|  |.|...:|.|.|||||.|:.||..:     |....|:   
  Fly   415 LQLG----DASPELLYWFSEQTL--QPGPTVSLKCVATGNPLPQFTWSLDGFPIPDSSRFLV--- 470

  Fly   190 GSRELMKVESYNGSSLRLLRLERRQMGAYLCIASNDVPPAVSKRVSLSVQFAPMVRAPSQLLGTP 254
              .:.:.:.....|.:.:..::....|.|.|.|.|.: ..||....:::...|.:|...::.|..
  Fly   471 --GQYVTIHDDVISHVNISNVKEEDGGEYTCTAQNAI-GKVSHSAKVNIYGLPYIREMPKITGIS 532

  Fly   255 LGSDVQLECQVEASPSPVSYWLKGARTSNGFASVSTASLESGSPGPEMLLDGPKYGITERRDGYR 319
             |||:.::|.|...|....:|.:                           ||....|..|:..|.
  Fly   533 -GSDLIVKCPVAGYPIDKIHWER---------------------------DGQTLPINRRQRAYN 569

  Fly   320 GVMLLVVRSFSPSDVGTYHCVSTNSLGRAEGTLRLYEIKL 359
            ...|::.:.....|.|||.|::.|.  :.:.:.|..||::
  Fly   570 NGTLIIEQLQRLEDAGTYTCMAQNK--QKQTSRRNVEIQV 607

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
DIP-gammaNP_651649.1 IG_like 47..139 CDD:214653 22/122 (18%)
Ig 47..129 CDD:299845 20/112 (18%)
Ig 140..238 CDD:299845 25/102 (25%)
IG_like 247..355 CDD:214653 21/107 (20%)
Ig 256..351 CDD:299845 19/94 (20%)
Dscam4NP_001261571.1 Ig 31..124 CDD:416386
Ig strand A 32..35 CDD:409353
Ig strand A' 41..45 CDD:409353
Ig strand B 48..57 CDD:409353
Ig strand D 75..78 CDD:409353
Ig strand E 83..88 CDD:409353
Ig strand F 101..109 CDD:409353
Ig strand G 112..124 CDD:409353
Ig 235..326 CDD:416386 3/28 (11%)
Ig strand A 235..238 CDD:409353
Ig strand A' 244..248 CDD:409353
Ig strand B 251..258 CDD:409353
Ig strand C 266..271 CDD:409353
Ig strand C' 276..279 CDD:409353
Ig strand D 285..289 CDD:409353