DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-gamma and rig-3

DIOPT Version :9

Sequence 1:NP_651649.1 Gene:DIP-gamma / 43417 FlyBaseID:FBgn0039617 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_509155.1 Gene:rig-3 / 180958 WormBaseID:WBGene00004370 Length:487 Species:Caenorhabditis elegans


Alignment Length:415 Identity:80/415 - (19%)
Similarity:147/415 - (35%) Gaps:89/415 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LQSTLFVILIMATKCGSGSTQNQHHESSSQLDPDPEFIGFINNVTYPAGREAILAC---SVRNLG 66
            |...|||..:.|:...|.:..|....||..:|.|      .|.:|...|::.:::|   |...:.
 Worm    12 LAMCLFVSAVSASDSPSSNEANPIVISSEAMDYD------TNTITVREGKKLMVSCVFESDEQIH 70

  Fly    67 KNKVGWLRASDQTV----------LALQGRVVTHNARISVMHQDMHTWKLKISKLRESDRGCYMC 121
            |:.:.|.:|:...:          :.|..:...|. :.|:....:||          .|.|.|.|
 Worm    71 KSDLLWKQANGNNIDGESNPSLFSVILNEKGSKHR-KTSLHFSSVHT----------RDTGLYTC 124

  Fly   122 QINTSPMKKQVGCIDVQVPPDIINEESSADLAVQEGEDATLTC--KATGNPQPRVTWRREDGEMI 184
            ...|:..:.....|.:.|.|.|...:.........||..|:.|  |.....:|.:.....:||  
 Worm   125 TGRTAGGENFEKTIKLVVLPAIEWNDKDTVKGALLGEPITIDCGVKGPSGKEPMIQMTNGNGE-- 187

  Fly   185 LIRKPGSRELMKVESYNGSSLRLLRLERRQMGAYLCI--------ASNDVPPAVSKRVSLSVQFA 241
                |...|:..:.. |.:::..|:.|..:: ...||        :..:.|....|.|::.|...
 Worm   188 ----PLDEEIWTIAG-NEATIDSLKKEHAEL-TVSCITIEMHQETSKEEFPVVDRKDVNIEVYTL 246

  Fly   242 PMVRAPSQLLGTPLGSDVQ---LECQVEASPSPVSYW--------LKGARTSNGFASVSTASLES 295
            |.......:..|.:.:.|:   :.|.|..|..||.::        :|.:...|.|.:|       
 Worm   247 PEFETEESVQYTVIDNHVRDAIIYCNVTHSFPPVRHYTFYHGDEEIKMSDKFNIFVNV------- 304

  Fly   296 GSPGPEMLLDGPKYGITERRDGYRGVMLLVVRSFSPSDVGTYHCVSTNSLGRAEGTLRLYEIK-- 358
                          |:::...       |.:.:.:.:|:|||.|.:.|...::..|:.|.|..  
 Worm   305 --------------GVSQGAH-------LKIHNVNENDLGTYKCEANNIKAKSYHTIHLREANAP 348

  Fly   359 LHPGASASNDDHLNYIGGLEEAARN 383
            ..|..:...|...:.|..:|...|:
 Worm   349 AEPKVTLIEDKRHSIIWKVESIDRD 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-gammaNP_651649.1 IG_like 47..139 CDD:214653 18/104 (17%)
Ig 47..129 CDD:299845 17/94 (18%)
Ig 140..238 CDD:299845 20/107 (19%)
IG_like 247..355 CDD:214653 20/118 (17%)
Ig 256..351 CDD:299845 18/105 (17%)
rig-3NP_509155.1 IG_like 48..142 CDD:214653 18/104 (17%)
Ig 267..341 CDD:319273 18/101 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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