DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-gamma and rig-4

DIOPT Version :9

Sequence 1:NP_651649.1 Gene:DIP-gamma / 43417 FlyBaseID:FBgn0039617 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:371 Identity:69/371 - (18%)
Similarity:122/371 - (32%) Gaps:121/371 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 NNVTYPAGREAILACSVRNLGKNKVGWLRASDQTVLALQGRVVTHNARISVMHQDMHTWKLKISK 110
            |.:....|....|.|||:......:.|.:         .|.::|           ....||.|.:
 Worm   331 NEIQKTVGSSLSLKCSVKKKSSMDIKWYK---------NGLMMT-----------TQRGKLTIDR 375

  Fly   111 LRESDRGCYMCQ---------------------------------------INTSPMKK------ 130
            :::.|.|.|.|:                                       :.|.|.:|      
 Worm   376 IKQDDFGLYQCEATNAAGADLASVWVKEGEANETVATEMSEDGMSLEEEISMETPPPRKLKFFDN 440

  Fly   131 -----QVGCIDVQVPPDIINEESSADLAVQEGED-ATLTCKATGNPQPRVTWRREDGEMILIRKP 189
                 |:.....::.|.....::..||.|..|.| ..:.|.|||:|.|.:.|.....|:      
 Worm   441 SKSQEQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNIIWLLNGHEI------ 499

  Fly   190 GSRELMKVESYNGSSLRLLRLERRQMGAYLC-IASNDVPPAVSKRV---SLSVQFAPMVRAPSQL 250
             ..:.:|.:..| ..|.:..:.:...|.|.| |:.::|....:.:|   || :::.|   |..:.
 Worm   500 -QTDNVKYDLTN-DGLAIHDIRKSDEGEYTCEISGSNVKATANVQVNGDSL-IEYGP---ADQKS 558

  Fly   251 LGTPLGSDVQLECQVE---ASPSPVSYWLKGARTS-NGFASVSTASLESGSPGPEMLLDGPKYGI 311
            |   :|::|:..|:|.   ...:.|.::|...... ||.:.:..:....||              
 Worm   559 L---IGTNVEFSCEVAKEYVRKASVEWYLNDVLLPVNGNSGLRISRNRKGS-------------- 606

  Fly   312 TERRDGYRGVMLLVVRSFSPSDVGTYHCVSTNSLGRAEGTLRLYEI 357
                        |::|...|.:.|.|.|..|.. ||.|....:.:|
 Worm   607 ------------LIIRQVGPDNTGEYRCRVTVD-GREENASAMLQI 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-gammaNP_651649.1 IG_like 47..139 CDD:214653 19/141 (13%)
Ig 47..129 CDD:299845 17/120 (14%)
Ig 140..238 CDD:299845 25/102 (25%)
IG_like 247..355 CDD:214653 21/111 (19%)
Ig 256..351 CDD:299845 20/98 (20%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 16/90 (18%)
IGc2 338..393 CDD:197706 15/74 (20%)
I-set 459..543 CDD:254352 21/91 (23%)
IGc2 478..534 CDD:197706 15/63 (24%)
IG_like 553..639 CDD:214653 23/118 (19%)
Ig 564..635 CDD:143165 19/97 (20%)
FN3 643..747 CDD:238020
FN3 756..850 CDD:238020
FN3 858..954 CDD:238020
FN3 959..1042 CDD:238020
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 1258..1356 CDD:238020
FN3 1361..1453 CDD:238020
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.