DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-gamma and ncam1b

DIOPT Version :9

Sequence 1:NP_651649.1 Gene:DIP-gamma / 43417 FlyBaseID:FBgn0039617 Length:413 Species:Drosophila melanogaster
Sequence 2:XP_005157462.1 Gene:ncam1b / 114442 ZFINID:ZDB-GENE-010822-2 Length:1055 Species:Danio rerio


Alignment Length:329 Identity:86/329 - (26%)
Similarity:128/329 - (38%) Gaps:77/329 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 NVTYPAGREAILACSVRNLGKNKVGWLRASDQTVLALQGRVVTHNA------RISVMHQDMHTWK 105
            |.|...|...:|||......:..|.|.|               :||      :.|..........
Zfish   219 NATADMGFSTLLACDPDGFPEPIVTWRR---------------NNAPLESGNKYSFNEDGSEMTV 268

  Fly   106 LKISKLRESDRGCYMC-QINTSPMKKQVGCIDVQVPPDIINEESSADLAVQEGEDATLTCKATGN 169
            |.::||   |.|.|.| ..|.:...:|...:.|.|.|.|...||..  ..:..|..||||:|||:
Zfish   269 LDVTKL---DEGDYTCIAKNKAGESEQELSLKVFVQPKITYLESQT--TTEMDEQVTLTCEATGD 328

  Fly   170 PQPRVTWR-----REDGEMILIRKPGSRELMKVESYNG-------------SSLRLLRLERRQMG 216
            |.|.:||.     ..:||....::.......:.|.:.|             |||.|...:....|
Zfish   329 PTPTITWSFGTRVFTEGEQEQQKRIYQASWTRPEQHKGPDGEVLVRSDARVSSLTLKYPQYTDAG 393

  Fly   217 AYLCIASNDVPPAVSKRVSLSVQFAPMVRAPSQLLGTPLGSDVQLECQVEASPSPVSY-WLKGAR 280
            .|||.|.|.:...| :.|||.|::||.:.. |..:.|..|:...:.|:|.|.||.||. ||:   
Zfish   394 QYLCTARNAIGETV-QPVSLEVRYAPKILG-SVAVYTWEGNPANISCEVLAHPSDVSITWLR--- 453

  Fly   281 TSNGF--ASVSTASLE-SGSPGPEMLLDGPKYGITERRDGYRGVMLLVVRSFSPSDVGTYHCVST 342
              :||  .:.:|:::: ..:|....|...|:                     |.||.|.|:|.::
Zfish   454 --DGFQLPNANTSNIKIHNTPSASYLEVNPE---------------------SQSDFGNYNCTTS 495

  Fly   343 NSLG 346
            |.:|
Zfish   496 NEIG 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-gammaNP_651649.1 IG_like 47..139 CDD:214653 22/98 (22%)
Ig 47..129 CDD:299845 20/88 (23%)
Ig 140..238 CDD:299845 34/115 (30%)
IG_like 247..355 CDD:214653 26/104 (25%)
Ig 256..351 CDD:299845 24/95 (25%)
ncam1bXP_005157462.1 Ig 20..112 CDD:299845
I-set 21..111 CDD:254352
IG_like 121..205 CDD:214653
IGc2 128..189 CDD:197706
Ig 208..301 CDD:299845 22/99 (22%)
I-set 212..298 CDD:254352 21/96 (22%)
I-set 298..414 CDD:254352 36/118 (31%)
Ig 300..414 CDD:299845 35/116 (30%)
IG_like 426..505 CDD:214653 25/100 (25%)
Ig 434..505 CDD:143165 23/92 (25%)
FN3 513..606 CDD:238020
FN3 629..720 CDD:238020
Chorion_3 <815..1019 CDD:253174
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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