DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11828 and p4ha3

DIOPT Version :9

Sequence 1:NP_651648.5 Gene:CG11828 / 43416 FlyBaseID:FBgn0039616 Length:458 Species:Drosophila melanogaster
Sequence 2:XP_021322008.1 Gene:p4ha3 / 563281 ZFINID:ZDB-GENE-041010-4 Length:616 Species:Danio rerio


Alignment Length:534 Identity:133/534 - (24%)
Similarity:220/534 - (41%) Gaps:135/534 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DELIGYMRQYAMELQHKVNTMRTFQEEWMTRRAL--GPADPTSYVANPLISFPLMRRT------- 64
            |.||.|:...|..|:   :..|.|.........:  .|:||   :|||:.:|.|::|.       
Zfish    43 DHLIIYIEHEAQRLE---DIKRFFSRVTSLHDGIYNEPSDP---IANPIAAFKLVKRLKSEWLNV 101

  Fly    65 --YTDVPKLLELAREEFKPGPFQKFIDYDLSSISDVELETAVTGMLRFQGVYGMDESEMANGKLH 127
              .|:..:.:::.||:::.      ::..|..:.|  |..|..|::|.|.||.:....:..|  |
Zfish   102 VHSTEAEENIKVLREDYRR------MESSLPKLED--LRGAAHGLMRLQDVYNLHVESLVRG--H 156

  Fly   128 GKQYNS-----RMSAADCLA---------VATHLENVDKGKLACKWFKVAIDQY----------- 167
            .:|.:.     ::|.:|.|:         ||..||:.....|   ||:.|:..:           
Zfish   157 FQQISDPVDFYKLSVSDMLSGDDCFLVGKVAYDLEDYYHSVL---WFEEAVRLFRGTEWSPENEG 218

  Fly   168 --EEKL--------------------------DPVNRLLQTGRSQIYEKLGLTLLAMHDLPASQA 204
              |:.|                          ||:||.:.....: |||     |...:|||:  
Zfish   219 TLEDALDHLAFSHFKTGNISHALSLSRELLLHDPMNRRVHFNVEK-YEK-----LLNENLPAT-- 275

  Fly   205 AFRDSIGWASKEDNTDLAKHLKDKLAHMFVHVDNCRGKNLLP---SKSYLRCRYLRDGSPFLRMA 266
                |.|...|..:   ..:|:.:.|:..:    |:.|...|   ....|.|.|..:|||.|.:.
Zfish   276 ----SSGLTLKRPD---GIYLRTRNAYEQL----CQTKGSQPKHFENPSLFCDYFTNGSPALFLQ 329

  Fly   267 PVKLEQLNIEPFVGLFHDAISPAEQKDLLH--------------LTDSRLEHRKKDSSSVEAKVD 317
            |::.|.::::|:|.|||..::.||.|::..              :..:..|:|    .|..|.:.
Zfish   330 PIRREIISLQPYVVLFHGFVTQAEAKNIRKYAMPGLRRSVVASGMNQATAEYR----ISKSAWLK 390

  Fly   318 TNASDHVRRIHQRIEDITGFDLEE--SEPLTVSNYGIGGQDFIHLDCEQPKEFIGYYPKE-YRSA 379
            .:|.:.|.::.|||..:||.:::.  :|.|.|.||||||....|.|.........|..|. .|.|
Zfish   391 ESAHEVVGKLDQRITLVTGLNVQPPYAEYLQVVNYGIGGHYEPHFDHATSDSSPLYRLKTGNRVA 455

  Fly   380 SAMFYLSDVQMGGYASFPDLGFGFKPRRGSALVWHNTDNSGNCDTRSLQATCPVLLGNQWVAKKW 444
            :.|.|||.||.||..:|....|.....:.:||.|.|...:|..:..:|.|.|||::||:|     
Zfish   456 TIMIYLSPVQAGGSTAFIYANFSVPVVQNAALFWWNLHKNGQGNVDTLHAGCPVIVGNKW----- 515

  Fly   445 ISGSGQWRRKSCRK 458
                |.::.|:..|
Zfish   516 ----GMFKNKNFHK 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11828NP_651648.5 P4Ha_N 1..126 CDD:285528 30/127 (24%)
P4Hc 287..445 CDD:214780 52/174 (30%)
p4ha3XP_021322008.1 P4Ha_N 27..157 CDD:311993 30/129 (23%)
P4Hc 350..519 CDD:214780 53/181 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583407
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

Return to query results.
Submit another query.