DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11828 and p4ha3

DIOPT Version :9

Sequence 1:NP_651648.5 Gene:CG11828 / 43416 FlyBaseID:FBgn0039616 Length:458 Species:Drosophila melanogaster
Sequence 2:XP_031752143.1 Gene:p4ha3 / 100495824 XenbaseID:XB-GENE-962355 Length:547 Species:Xenopus tropicalis


Alignment Length:534 Identity:135/534 - (25%)
Similarity:232/534 - (43%) Gaps:105/534 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASLLQ---IEDELIGYMRQYAMELQHKVNTMRTFQEE-WMTRRALGPADPTSYVANPLISFPLM 61
            |||:.|   :|..|:.::.||..:...:::.:|.|.|: ..:.:|.||.     |.:|::::.|:
 Frog    35 MASIQQAVGMEGALLQHLGQYLQQETQRLSDLRRFYEKVQASHQAGGPP-----VQDPILAYTLL 94

  Fly    62 RRTYTDVPKLLELAR-----EEFKPGPFQKFIDYDLSSISDVELETAVTGMLRFQGVYGMDESEM 121
            :|..::...::..:.     :..|.| ::| :..||.:..||  |.|...::|.|.||.::.:.:
 Frog    95 KRLQSEWMNVVHSSEANENIQALKEG-YEK-VKQDLPAPEDV--EGAAKALMRLQDVYSLNVNGL 155

  Fly   122 ANGK-----------LHGKQYNSRMSAADCL---AVATHLENV---------------------- 150
            |.|.           |:...:.|.|||.||.   .||..:|:.                      
 Frog   156 ARGMFQRSSSSDTKLLYNPPHLSIMSADDCFHIGKVAYDMEDYYHSIPWLEEAVSRFRGSYGNWR 220

  Fly   151 --DKGK-------LACKWFKV-----AIDQYEEKL--DPVNRLLQTGRSQIYEKLGLTLLAMHDL 199
              |:|.       ||..::|.     |:|...|.|  ||.|..|....:: ||::      :::.
 Frog   221 TEDEGSLEEALDYLAFSYYKAGNISHALDLSRECLLYDPDNGRLARNIAK-YEQI------LYES 278

  Fly   200 PASQAAFRDSIGWASKEDNTDLAKHLKDKLAHMFVHVDNCRGKNLLPSK---SYLRCRYLRDGSP 261
            |.:.|   |:.....:..|   ..|||.:    .::...|:.....|:.   .::.|.|..:..|
 Frog   279 PTADA---DAEEMKLQRPN---VTHLKTR----DLYEGLCQTLGSQPTSYEDPHMSCMYDTNSHP 333

  Fly   262 FLRMAPVKLEQLNIEPFVGLFHDAISPAEQKDLLHLTDSRLEHRK-----KDSSSVEAKVDTNA- 320
            :|.:.|:|.|.:::.|.|.|:||.:|..|.:.:..|....| ||.     :..:..|.::..:| 
 Frog   334 YLLLQPMKKEIVSLRPQVVLYHDFVSDLEAEKIKELASPWL-HRSVVASGEKQAEAEYRISKSAW 397

  Fly   321 -----SDHVRRIHQRIEDITGFDLEE--SEPLTVSNYGIGGQDFIHLDCEQPKEFIGYYPKE-YR 377
                 ...|:.:..||..:||.:...  :|.|.|.||||||....|.|....::...|.... .|
 Frog   398 LKDTIHPFVQNLDTRISAVTGLNAHPPYAEYLQVVNYGIGGHYEPHFDHATSRKSPLYRTNTGNR 462

  Fly   378 SASAMFYLSDVQMGGYASFPDLGFGFKPRRGSALVWHNTDNSGNCDTRSLQATCPVLLGNQWVAK 442
            .|:.|.|||.|.:||..:|....|.....:.:|:.|.|...:|..|..:|.|.|||::|::|||.
 Frog   463 LATFMIYLSHVDLGGSTAFVFANFSSPVVKNAAVFWWNLHRNGLGDEDTLHAGCPVIIGSKWVAN 527

  Fly   443 KWISGSGQWRRKSC 456
            |||...||...:.|
 Frog   528 KWIHEFGQEFHRPC 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11828NP_651648.5 P4Ha_N 1..126 CDD:285528 33/144 (23%)
P4Hc 287..445 CDD:214780 51/171 (30%)
p4ha3XP_031752143.1 P4Ha_N 35..>104 CDD:400573 18/73 (25%)
TPR repeat 182..210 CDD:276809 6/27 (22%)
TPR repeat 215..257 CDD:276809 9/41 (22%)
P4Hc 359..531 CDD:214780 52/172 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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