DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Doa and clk1

DIOPT Version :9

Sequence 1:NP_001014681.2 Gene:Doa / 43415 FlyBaseID:FBgn0265998 Length:2045 Species:Drosophila melanogaster
Sequence 2:XP_012814515.2 Gene:clk1 / 549675 XenbaseID:XB-GENE-6041600 Length:480 Species:Xenopus tropicalis


Alignment Length:526 Identity:239/526 - (45%)
Similarity:330/526 - (62%) Gaps:60/526 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly  1497 LQFHQQHQQ-----QQHLQQQQQHPQQQQHQHSSFGVGMMSRNYYNMPKQPERKPLQTFDPYAYP 1556
            :||.....|     :.|..::.:.|.:.:.:..........|:..:..::...|.:.:.|.: |.
 Frog     1 MQFEAASTQLVLRLEMHYSKRSRRPDEDEKEWYFSKCHKRKRSQSSDEEKERHKKISSSDSH-YV 64

  Fly  1557 KPNQMQPVKYQQQQQHPHTQFQNASAGGGGGGAAGLQYDPNTNTQLFYASPASSSSNKQPQQPQQ 1621
            :...|..   :.|....:.:.:|...||            :...:..|.|..||.          
 Frog    65 EDKSMCS---RGQHDRRYVELRNNYKGG------------HHEHRHHYRSSKSSG---------- 104

  Fly  1622 QQQQQQSQLQQSNSVIFNHSGQQHQPHQQQQNEMSKSALGLHFIETAKPVIQDDADGHLIYHTGD 1686
                      ||:|...:|..:..:||...:....||    |..:.::.| :.|.:||||..:||
 Frog   105 ----------QSSSSSSSHKKRHKKPHHSSRTSHLKS----HRKKRSRSV-EVDEEGHLICESGD 154

  Fly  1687 ILHHRYKIMATLGEGTFGRVVKVKDM----ERDYCMALKIIKNVEKYREAAKLEINALEKIAQKD 1747
            :|..||:|:..||||.||:|::..|.    ||   :|:|||||||:|||||:.||..||.:.:||
 Frog   155 VLRERYEIVHALGEGAFGKVLECIDHLRGGER---VAVKIIKNVERYREAAQSEIQVLEHLNRKD 216

  Fly  1748 PHCDHLCVKMIDWFDYHGHMCIVFEMLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDN 1812
            |.....||:|::|||:|||:|||||:||||.:||::||::.|:|||.:|:||||:|.|:.|||.|
 Frog   217 PINTFRCVQMLEWFDHHGHICIVFELLGLSTYDFIKENSFLPFPLDHIRNMAYQICKSINFLHQN 281

  Fly  1813 RLTHTDLKPENILFVDSDYTSHYNHKINREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRA 1877
            :||||||||||||||.|||..|:||...::.|.:||:|::::||||||::.|:||.:||||||||
 Frog   282 QLTHTDLKPENILFVHSDYVVHFNHAKKQDERYLKNSDIKIVDFGSATYNDEYHSALVSTRHYRA 346

  Fly  1878 PEVILELGWSQPCDVWSIGCILFELYLGITLFQTHDNREHLAMMERILGQIPYRMARNHTLYSKT 1942
            ||||||||||||||||||||||.|.|||:|:|||||::|||||||||||.:|..|.:      ||
 Frog   347 PEVILELGWSQPCDVWSIGCILIEYYLGLTVFQTHDSKEHLAMMERILGPLPLHMIK------KT 405

  Fly  1943 -KTKYFYHGKLDWDEKSSAGRYVRDHCKPLFLCQLSDSEDHCELFSLIKKMLEYEPSSRITLGEA 2006
             |.||||..:|||||.|||||||:..||||....:||::||.:||.||::||||:|:.||||.||
 Frog   406 RKHKYFYLDRLDWDEHSSAGRYVKKRCKPLKEYIVSDNKDHHQLFDLIQRMLEYDPAKRITLEEA 470

  Fly  2007 LHHPFF 2012
            |.||||
 Frog   471 LKHPFF 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DoaNP_001014681.2 PKc_CLK 1679..2012 CDD:271036 207/337 (61%)
S_TKc 1692..2012 CDD:214567 200/324 (62%)
clk1XP_012814515.2 PKc_like 147..476 CDD:419665 207/337 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000672
OrthoInspector 1 1.000 - - otm47924
Panther 1 1.100 - - O PTHR45646
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X440
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.010

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