DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doa and Clk3

DIOPT Version :10

Sequence 1:NP_001014681.2 Gene:Doa / 43415 FlyBaseID:FBgn0265998 Length:2045 Species:Drosophila melanogaster
Sequence 2:XP_006243208.1 Gene:Clk3 / 171305 RGDID:621259 Length:640 Species:Rattus norvegicus


Alignment Length:636 Identity:255/636 - (40%)
Similarity:340/636 - (53%) Gaps:155/636 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1391 ASDPFMQQQHMPAHQQQQHLPH-----KLQQSYSSSHVPKQAPKSGLAMFLQKNTNKENKFGQPM 1450
            |:..:....|...::..:..|:     |.::|||..|                    |.:...|.
  Rat   144 AAGAWETMHHCKRYRSPEPDPYLSYRWKRRRSYSREH--------------------EGRLRYPS 188

  Fly  1451 QQQPPGMMPQMYGYQAPQQQSKIGYPRTGAPLTHSASFSSAQRPTALQFHQQHQQQQHLQQQQQH 1515
            :::||                    ||.....:|       .|....:.:::|:.....:.:::.
  Rat   189 RREPP--------------------PRRSRSRSH-------DRIPYQRRYREHRDSDTYRCEERS 226

  Fly  1516 PQQQQHQHSSFGVGMMSRNYYNMPKQPERKPLQTFDPYAYPKPNQMQPVKYQQQQQHPHTQFQNA 1580
            |        |||     .:.|...:...|:..:...||              :.::|.|...:..
  Rat   227 P--------SFG-----EDCYGSSRSRHRRRSRERGPY--------------RTRKHAHHCHKRR 264

  Fly  1581 SAGGGGGGAAGLQYDPNTNTQLFYASPASSSSNKQPQQPQQQQQQQQSQLQQSNSVIFNHSGQQH 1645
            :..                     .|.|||.|             |||..:.|.||         
  Rat   265 TRS---------------------CSSASSRS-------------QQSSKRSSRSV--------- 286

  Fly  1646 QPHQQQQNEMSKSALGLHFIETAKPVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVK 1710
                                       :||.:|||:...||.|..||:|:..|||||||:||:..
  Rat   287 ---------------------------EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECL 324

  Fly  1711 DMERDYC-MALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFEML 1774
            |..|... :|||||:||.||||||:||||.|:||.:||.....|||.|.|||::||||||.||:|
  Rat   325 DHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELL 389

  Fly  1775 GLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYTSHYNHKI 1839
            |.:.|:||:|||::||||..|||||||||::::|||:|:||||||||||||||:|::.:.||...
  Rat   390 GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHK 454

  Fly  1840 NREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCILFELYL 1904
            :.|.:.||||.:|:.||||||||||||:|||:|||||.|||||||||:||||||||||||||.|.
  Rat   455 SCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR 519

  Fly  1905 GITLFQTHDNREHLAMMERILGQIPYRMARNHTLYSKTKTKYFYHGKLDWDEKSSAGRYVRDHCK 1969
            |.||||||:|||||.|||:|||.||     :|.::...|.||||.|.|.|||.||.||||:::||
  Rat   520 GFTLFQTHENREHLVMMEKILGPIP-----SHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCK 579

  Fly  1970 PLFLCQLSDSEDHCELFSLIKKMLEYEPSSRITLGEALHHPFFDRLPPHHR 2020
            ||....|.||.:|.:||.|:::|||::|:.||||.|||.||||..|.|..|
  Rat   580 PLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLTPEER 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DoaNP_001014681.2 PHA03247 <205..634 CDD:223021
PKc_CLK 1679..2012 CDD:271036 209/333 (63%)
Clk3XP_006243208.1 PHA03247 29..>162 CDD:223021 2/17 (12%)
PKc_CLK3 292..622 CDD:271116 210/334 (63%)
Blue background indicates that the domain is not in the aligned region.

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