DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1647 and lst-5

DIOPT Version :9

Sequence 1:NP_651636.1 Gene:CG1647 / 43401 FlyBaseID:FBgn0039602 Length:1222 Species:Drosophila melanogaster
Sequence 2:NP_872063.2 Gene:lst-5 / 353399 WormBaseID:WBGene00016890 Length:346 Species:Caenorhabditis elegans


Alignment Length:336 Identity:67/336 - (19%)
Similarity:118/336 - (35%) Gaps:100/336 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 IKDEPAEQDTSLK-------GPPKKAGRKSICSVCGEKFLSKELADEHKSLVHVPS--------- 227
            :|:|..|::.||:       .|....|...:|          :..|...:::.||.         
 Worm    48 VKEEEEEEELSLERGESSNVHPSDAHGYLGMC----------DFEDSDDTMMPVPKREMTRQKFR 102

  Fly   228 ---IPRYICNACNQTHHNQSDIRAHQL-WHKLSKTPY------KCPLCESSVANAYAFTRH-LRE 281
               ...|.|:.|::....:.:::.|.: :|...||.:      ||.:|....:.......| |.|
 Worm   103 RFRHKEYQCDECDRMFTLKHNLQNHFVQYHMGCKTLHKACVSSKCDICGKIYSAVSVLAEHMLNE 167

  Fly   282 HTPPTPVQLLVLDR-ECPLCKKTFVTNFFYNTHRCAIRK-------RKCGGCSRTLNTEAAYMRH 338
            |.       ..||: |||.|.:.|:|......|....::       ::|.|.....|.|      
 Worm   168 HN-------RYLDQIECPDCHEFFLTQTALQKHMKEHKREEKHCPYKECRGIKFRFNRE------ 219

  Fly   339 APTCPKIYLNHSKHIMPQVVTNEAQMLIKNEIEEELLGLPPATTVPPDFVIDEGMQPVVVLERLS 403
                    ||  :|:..|..:.|....:.|.:..:|     :..:..:...::| .|:       
 Worm   220 --------LN--EHVRLQHKSKELSCCVCNMVFRQL-----SAKIKHEKTHEKG-SPI------- 261

  Fly   404 SPLLRSS--SGTDQLVAAKSKNSD--RVSARNYLKRVDQLLKNTINTLVSIKHEPEVHINDTGPP 464
            |.:|:||  |..::.|   .||.|  |........:.|:.|         :|.||   |:|:.|.
 Worm   262 SNILKSSKCSAVNRQV---EKNQDWFRTRGSERKAKCDEDL---------VKREP---ISDSPPS 311

  Fly   465 RGQAESDPEPE 475
            ..:......||
 Worm   312 SAKRRKIYVPE 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1647NP_651636.1 zf-AD 19..99 CDD:285071
C2H2 Zn finger 203..224 CDD:275368 2/20 (10%)
C2H2 Zn finger 233..253 CDD:275368 3/20 (15%)
C2H2 Zn finger 262..282 CDD:275368 4/20 (20%)
C2H2 Zn finger 297..314 CDD:275368 5/16 (31%)
lst-5NP_872063.2 C2H2 Zn finger 111..132 CDD:275368 3/20 (15%)
C2H2 Zn finger 147..168 CDD:275368 4/20 (20%)
C2H2 Zn finger 177..197 CDD:275368 6/19 (32%)
C2H2 Zn finger 208..227 CDD:275368 7/34 (21%)
C2H2 Zn finger 235..255 CDD:275368 2/24 (8%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5489
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24406
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.050

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