DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1523 and AT5G08390

DIOPT Version :9

Sequence 1:NP_651635.2 Gene:CG1523 / 43400 FlyBaseID:FBgn0039601 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_568194.2 Gene:AT5G08390 / 830737 AraportID:AT5G08390 Length:839 Species:Arabidopsis thaliana


Alignment Length:635 Identity:125/635 - (19%)
Similarity:206/635 - (32%) Gaps:231/635 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 KEIFKVPD--AHTDSVNCIKF--FDERLFATGSDDFTVALWDLRNMKQKLRVLHGHSNWVKNIEY 141
            |..:|:.:  ||:.:|||:|.  ...|:..||.:|..|.||.: .....:..|:|||:.:.::.:
plant     4 KRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLYGHSSGIDSVTF 67

  Fly   142 SSKDKLLVSSGFDGSIFTWDINSQ---------------------------------------TE 167
            .:.:.|:.:....|:|..||:...                                       .:
plant    68 DASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRK 132

  Fly   168 QGLISQRVFHASGLMRCRISPTGDKLVLCTSGGYIMIIHHLDLTTLHKDLCGFRPGIYRLMQLGE 232
            :|.|.....|..|:...|.:|.|..:|   |||...::...|||                     
plant   133 KGCIHTYKGHTRGVNVLRFTPDGRWIV---SGGEDNVVKVWDLT--------------------- 173

  Fly   233 QYIPQAAKYDHVFSKRQKKNRVELVTDFPENNDAEMIMALQIHPHCCCMLT-------------- 283
                 |.|..|.|...:.|                 |.:|..|||...:.|              
plant   174 -----AGKLLHEFKSHEGK-----------------IQSLDFHPHEFLLATGSADKTVKFWDLET 216

  Fly   284 -----------------------RNVSCDEQS-----EWTCIHDINEEPVRSEDEQDEVEPQPKR 320
                                   ::|.|..|.     .|        ||:|..|..|        
plant   217 FELIGSGGTETTGVRCLTFNPDGKSVLCGLQESLKIFSW--------EPIRCHDGVD-------- 265

  Fly   321 KRVSTTLASRSSLNE------SQDQDTVGLTPRQARR--PLRVSSVQVFQLDN------SGAGR- 370
              |..:..|..:::|      |.:|:.||:......|  |:...:.|    .|      ||:|| 
plant   266 --VGWSNLSDMNVHEGKLLGCSYNQNCVGVWVVDLSRTEPMSGGATQ----SNSHPEKTSGSGRD 324

  Fly   371 --GASDNPS--VLTRSDSFIPDIWAAEVTVQERAIRQNRARVSNNHVSGYNFVYAISSGVLP--L 429
              |.:||.|  :|.:    :|.....:..::|.. ...:..||.|            |..||  .
plant   325 QAGLNDNSSKVILGK----LPGSQKVDPLLKETK-SLGKLSVSQN------------SDPLPKDT 372

  Fly   430 RQLGANSLMGSS----TSPRPLTTPPPTESNQSSSSSSSSSSSSSSSSSSNNSDTTVRLEIGNRL 490
            :..|.:|:..||    ..|:||.....|.|:.:...|.:.||:.|.|.|.:....|...:..:.:
plant   373 KSTGRSSVSQSSDPLVKEPKPLGRFSATHSSDTVKESRTLSSTGSVSDSPHRVTLTSAPKSASGI 437

  Fly   491 RL---------RSF-------NSPVTTPTFKENGHSILV-NAKKLLYYAAETNTKPGFIKEPGFS 538
            ..         |:|       |.||..   ||:...::| ..:.::..|:|:..:...|      
plant   438 STVVPNAAASKRNFGKANPKANPPVVN---KEDYFPVIVPRTEPIIEQASESRAELDII------ 493

  Fly   539 ADGRVVCSPY-----GNGVRLFGYSEDCCDYPKCQAFEEVKSKPRKLVEL 583
              ||.:  ||     ....|....|.:..|.|.....|..:|:|.:.:.|
plant   494 --GRTM--PYSLQSKAADSRRLSSSRNEPDLPTSSLLERSQSQPIEPITL 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1523NP_651635.2 WD40 43..235 CDD:295369 38/196 (19%)
WD40 <45..>218 CDD:225201 38/179 (21%)
WD40 repeat 51..87 CDD:293791 2/5 (40%)
WD40 repeat 95..129 CDD:293791 10/35 (29%)
WD40 repeat 136..174 CDD:293791 7/76 (9%)
WD40 repeat 181..210 CDD:293791 7/28 (25%)
AT5G08390NP_568194.2 WD40 9..261 CDD:238121 54/306 (18%)
WD40 repeat 63..99 CDD:293791 5/35 (14%)
WD40 repeat 104..140 CDD:293791 2/35 (6%)
WD40 repeat 147..182 CDD:293791 13/63 (21%)
WD40 repeat 188..222 CDD:293791 6/33 (18%)
Katanin_con80 680..831 CDD:404758
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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