DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1523 and LUH

DIOPT Version :9

Sequence 1:NP_651635.2 Gene:CG1523 / 43400 FlyBaseID:FBgn0039601 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_001189659.1 Gene:LUH / 817830 AraportID:AT2G32700 Length:806 Species:Arabidopsis thaliana


Alignment Length:306 Identity:64/306 - (20%)
Similarity:109/306 - (35%) Gaps:86/306 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RRESGFHIHRSDDNSLMRRIYSSMNMFNSYHANCWPTDAGRTGAIFNLEFNADGNVVVAATERKC 71
            :|.|..|...|...|           ||  ..:|....|.:   :....|:.||.::.:|...|.
plant   504 KRNSSVHTETSKPFS-----------FN--EVSCIRKSASK---VICCSFSYDGKLLASAGHDKK 552

  Fly    72 VLVFDAITQKEIFKVPDAHTDSVNCIKFF-DERLFATGSDDFTVALWDLRNMKQKLRVLHGHSNW 135
            |.:::..| .::...|:.|...:..::|. :....||.|.|.|:.:||..:....||.:.||:..
plant   553 VFIWNMET-LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAP 616

  Fly   136 VKNIEY-SSKDKLLVSSGFDGSIFTWDINSQTEQGLISQRVFHASGLMRCRISPTGDKLVLCTSG 199
            |.:|:: ..|.:||.|...:..|..||||:...:.     |..||..:|                
plant   617 VMSIDFHPKKTELLCSCDSNNDIRFWDINASCVRA-----VKGASTQVR---------------- 660

  Fly   200 GYIMIIHHLDLTTLHKDLCGFRPGIYRLMQLGEQYIPQAAKYD-HVFSKRQKKNRVELVTDFPEN 263
                                |:|      :.| |::..|::.. .:|.......||.:......|
plant   661 --------------------FQP------RTG-QFLAAASENTVSIFDIENNNKRVNIFKGHSSN 698

  Fly   264 NDAEMIMALQIHPHCCC---MLTRNVSCDEQSEWT-----CIHDIN 301
                      :|..|..   .|..:||.|....|:     |||:::
plant   699 ----------VHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELS 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1523NP_651635.2 WD40 43..235 CDD:295369 41/193 (21%)
WD40 <45..>218 CDD:225201 37/174 (21%)
WD40 repeat 51..87 CDD:293791 7/35 (20%)
WD40 repeat 95..129 CDD:293791 10/34 (29%)
WD40 repeat 136..174 CDD:293791 11/38 (29%)
WD40 repeat 181..210 CDD:293791 1/28 (4%)
LUHNP_001189659.1 LisH 10..36 CDD:285685
WD40 521..806 CDD:238121 57/276 (21%)
WD40 521..>806 CDD:225201 57/276 (21%)
WD40 repeat 534..569 CDD:293791 8/35 (23%)
WD40 repeat 575..612 CDD:293791 10/36 (28%)
WD40 repeat 617..654 CDD:293791 12/41 (29%)
WD40 repeat 659..692 CDD:293791 9/75 (12%)
WD40 repeat 699..734 CDD:293791 10/34 (29%)
WD40 repeat 742..775 CDD:293791
WD40 repeat 781..805 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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