DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp39 and PRP42

DIOPT Version :10

Sequence 1:NP_733256.2 Gene:Prp39 / 43399 FlyBaseID:FBgn0039600 Length:1066 Species:Drosophila melanogaster
Sequence 2:NP_010521.1 Gene:PRP42 / 851821 SGDID:S000002643 Length:544 Species:Saccharomyces cerevisiae


Alignment Length:536 Identity:103/536 - (19%)
Similarity:185/536 - (34%) Gaps:180/536 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   365 LDKYWRAVKEDS------------TDFTGWTYLLQYVDNESD----------AEAAREAYDTFLS 407
            :|||...:.:::            .....|..||.|:...|.          .:..|..|.:.|:
Yeast     1 MDKYTALIHDENFSTLTLNVSRYPKSLAYWEKLLNYIVKASAPICKSTEPQLLKLIRCTYSSMLN 65

  Fly   408 HYPYCYGYWRKYADYEKRKGIKANCYKVFERGLEAI-PLSVDLWIHYLMHVKSNHGDDETFVRSQ 471
            .:||...|:..:|..|.:.|..:..:|:|:|||:|. ..|:.||..||... :|....:..:..:
Yeast    66 EFPYLENYYIDFALLEYKLGNVSMSHKIFQRGLQAFNQRSLLLWTSYLKFC-NNVISHQKQLFKK 129

  Fly   472 YERAVKACGLEFRSDKLWDAYIRWEN----ESKRYHRVVQIYDRLLAIPTQGYNGHF-------D 525
            ||.|.:..||.|.|.:.||.|:...:    .||:|..|::   ::|.||...::..:       |
Yeast   130 YETAEEYVGLHFFSGEFWDLYLEQISSRCTSSKKYWNVLR---KILEIPLHSFSKFYALWLQRID 191

  Fly   526 NFQDLINQHDVTITLANEEVIRLRKDFHERQQSKSSKSSSKHRRDSSSSSKD----KDSKERERE 586
            :..||.....:|   :.:|:::                  |.:.|.:.|.:.    :|:|:    
Yeast   192 DIMDLKQLSQLT---SKDELLK------------------KLKIDINYSGRKGPYLQDAKK---- 231

  Fly   587 KDKDKDKDKDKEKRETVGGGVGKSPKDTSETQVDESDSTTDLTTESESSHAASKPAMQIDFSDLS 651
                                  |..|.|.|..                        |.:.:..| 
Yeast   232 ----------------------KLKKITKEMY------------------------MVVQYQVL- 249

  Fly   652 TLNDEEVVSIRDRAISARRKVHKLTVSAVTARWSFEEGIKRPYFHVKP---LERAQLKNWKDYLD 713
                 |:.||                        ||..|...|: ..|   :...:::.|..|||
Yeast   250 -----EIYSI------------------------FESKIYINYY-TSPETLVSSDEIETWIKYLD 284

  Fly   714 FEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYL-ESLEDQSGV--------------VDLVR 763
            :.|.........:.|:|.|:..|.||..|:|..::| .|..|..|.              .::::
Yeast   285 YTITLQTDSLTHLNFQRALLPLAHYDLVWIKYSKWLINSKNDLLGAKNVLLMGLKFSLKKTEIIK 349

  Fly   764 DVYRRACRIHHPDKPSLHLMWAAFEECQMNFDDAAEILQ---------RIDQRCPNLLQLSYRRI 819
            .:|...|:::     ...|:....|:.:.::.|..|.:.         :....|.|.|..|  |.
Yeast   350 LLYSVICKLN-----EYVLLRNLLEKIESSYSDNVENVDDFEIFWDYLQFKTFCQNSLYSS--RY 407

  Fly   820 NVERRRGALDKCRELY 835
            :..:..|.|:|  ||:
Yeast   408 SDSQSNGLLNK--ELF 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp39NP_733256.2 PHA03169 11..>269 CDD:223003
RNA14 359..>535 CDD:227438 49/203 (24%)
Spy 755..>962 CDD:443119 17/104 (16%)
TPR repeat 884..915 CDD:276808
PRP42NP_010521.1 RNA14 56..>183 CDD:227438 38/130 (29%)
Blue background indicates that the domain is not in the aligned region.

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