DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp39 and prpf39.2

DIOPT Version :10

Sequence 1:NP_733256.2 Gene:Prp39 / 43399 FlyBaseID:FBgn0039600 Length:1066 Species:Drosophila melanogaster
Sequence 2:XP_002937548.1 Gene:prpf39.2 / 496864 XenbaseID:XB-GENE-5860807 Length:659 Species:Xenopus tropicalis


Alignment Length:733 Identity:225/733 - (30%)
Similarity:353/733 - (48%) Gaps:107/733 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   343 KEKDKDKDNNKDKEKERKKLP-DLDKYWRAVKEDSTDFTGWTYLLQYVDNESDAEAAREAYDTFL 406
            :|.|.:.:.:..||.|   || :....|....|:..:|.||..:|:||:..::..|.|:.||.||
 Frog    22 EESDDEGEPSDPKEPE---LPAEFKTLWEEATENPYNFNGWAKVLEYVETMNNLVAGRKVYDAFL 83

  Fly   407 SHYPYCYGYWRKYADYEKRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHVKS--NHGDDETFVR 469
            :.:|||||||:||||.|.:....|...:|:.|.|::|||||||||:|:..:|:  :....|:..:
 Frog    84 TRFPYCYGYWKKYADLELQLRNTAETEEVYCRALQSIPLSVDLWINYITFLKNTLDTALPESIEK 148

  Fly   470 SQ--YERAVKACGLEFRSDKLWDAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDLIN 532
            .|  :..|..|.|:||||||.|:.||.||.:...:.....:||::|:||||.|..|.:.|:..|:
 Frog   149 LQGAFRSAAAAAGMEFRSDKFWEMYIDWEIKQGNFREATAVYDQVLSIPTQLYRQHHERFKQHIS 213

  Fly   533 QHDVTITLANEEVIRLRKDFHERQQSKSSKSSSKHRRDSSSSSKDKDSKEREREKDKDKDKDKDK 597
            .|      |..|::|       .::.|...|..|                .|.|.|:...:|   
 Frog   214 AH------APHELLR-------EEEFKWICSKIK----------------AEGENDQIAAED--- 246

  Fly   598 EKRETVGGGVGKSPK-DTSETQVDESDSTTDLTTESESSHAASKPAMQIDFSDLSTLNDEEVVSI 661
                        ||. |..|..||.:|                 |.:|              ..:
 Frog   247 ------------SPSGDDQENPVDVTD-----------------PELQ--------------SKV 268

  Fly   662 RDRAISARRKVHKLTVSAVTARWSFEEGIKRPYFHVKPLERAQLKNWKDYLDFEIEKGDRERVLV 726
            :.:.:..|.::..|..:.|..||||||.|.|||||..||:|.||:||:.|||.||.:|..||::.
 Frog   269 KAQVLIIREQLFLLNEAEVRKRWSFEEAITRPYFHATPLDRTQLQNWRKYLDLEISQGRHERIVT 333

  Fly   727 LFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVRDVYRRACRIHHPDKPSLHLMWAAFEECQ 791
            |:||||:|||||:||||..::|:|...     ::..|.:.:|||.||.|.||:|.|.||||||..
 Frog   334 LYERCLVACALYEEFWLSYVQYMEPHS-----IEAARCILQRACCIHLPLKPTLSLYWAAFEEKH 393

  Fly   792 MNFDDAAEILQRIDQRCPNLLQLSYRRINVERRRGALDKCRELYKHYIESTKNKGIAGSLAIKYA 856
            ...|.|..:|..::...|.|..:..||:::|||.|.|::...|.:..::|:....:|...::|.|
 Frog   394 GQIDTARSVLYDLENLMPGLAMVRLRRVSLERRTGNLEEAEHLLEEAVKSSLGTELAAFYSVKLA 458

  Fly   857 RFLNKICHDLDAGLAALQQALERDPANTRVALQMIDLCLQRP-KVDEQEVVEIMDKFMARADIEP 920
            |.|.|:..:::.....|.:|||::|.|.|:.|.::::.:.|. ...|.:.:..:::.: ::.:..
 Frog   459 RLLLKLQGNMEKARKVLTEALEKEPDNPRLHLCLLEIEVSREGSQGEADALLCVERAL-KSSLSD 522

  Fly   921 DQKVLFAQRKVEFLEDFGSTARGLQDAQRALQQALTKAKEAQKKSDGSPSRKNSSSSKEGPVPTG 985
            |.|.:.:||::|||||..|....:..|....|:.|.:.:..::..:||.........|...|...
 Frog   523 DFKKMISQRRLEFLEDNSSNITSVLSAYDEHQKFLKQEELKRQAENGSEDETEEKKPKTETVVHI 587

  Fly   986 SAAAAYNNGGSAAAVAGYNYGAANPYYGQQNTAAAYP--SQTPQQASYDSYYNQWGYGSGGASAN 1048
            ||...:           .|....:|.....||....|  |..|.:....::|....||.|....|
 Frog   588 SAPPVH-----------VNRNTLHPRPMNYNTLLPTPTVSAPPYRPMLGAHYRAPAYGYGPWYQN 641

  Fly  1049 SGGSGYNYGQWSGYGNYY 1066
            .  |.||...|: |..:|
 Frog   642 Y--SAYNPPPWN-YNRFY 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp39NP_733256.2 PHA03169 11..>269 CDD:223003
RNA14 359..>535 CDD:227438 70/180 (39%)
Spy 755..>962 CDD:443119 60/207 (29%)
TPR repeat 884..915 CDD:276808 4/31 (13%)
prpf39.2XP_002937548.1 RNA14 24..>391 CDD:227438 155/449 (35%)
Blue background indicates that the domain is not in the aligned region.

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