DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp39 and prpf39

DIOPT Version :10

Sequence 1:NP_733256.2 Gene:Prp39 / 43399 FlyBaseID:FBgn0039600 Length:1066 Species:Drosophila melanogaster
Sequence 2:NP_001004520.1 Gene:prpf39 / 368864 ZFINID:ZDB-GENE-030616-420 Length:752 Species:Danio rerio


Alignment Length:891 Identity:289/891 - (32%)
Similarity:437/891 - (49%) Gaps:163/891 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 EDLADADTSNATIVNTEIVSEDELPLPSKPEINDAEEVSDEELPAPQRAELPEDAEVISEDEL-- 256
            ||..::.|......:.|  |.|...:......:|...:|..:|...|..|..|..:.:|:.|.  
Zfish     2 EDSGESMTGMLDSKSPE--SGDSPAMEGTTGTDDVTGLSTSDLTTEQPPESQEQTQPVSDMEFSV 64

  Fly   257 ----PASNNNNTATEPKAPLKRKAENESVKSTEDKDASSHESSTKDKSSEQYNPGSPTSESNDAQ 317
                .|..|.:.:..|..|....:|.....:.:.:|.|......|:       .|...|||    
Zfish    65 EHLKTAVQNIDQSASPAEPAAENSEQPPESNGQQEDQSEQPDDVKE-------AGQGDSES---- 118

  Fly   318 PSEKKLKVEESEPKEKKKEKERDKDKEKDKDKDNNKDKEKERKKLP-DLDKYWRAVKEDSTDFTG 381
            ||..:|:....||.|...|.:....:|.:               || :.::..:.|:::..||.|
Zfish   119 PSNMELEDAPKEPAEPAAEADPAAPQEPE---------------LPTEYERLSKVVEDNPEDFNG 168

  Fly   382 WTYLLQYVDNESDAEAAREAYDTFLSHYPYCYGYWRKYADYEKRKGIKANCYKVFERGLEAIPLS 446
            |.||||||:.|:....:|:|:|.|..|||||||||:||||.|::.|......:|:.|||:|||||
Zfish   169 WVYLLQYVEQENHLLGSRKAFDAFFLHYPYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLS 233

  Fly   447 VDLWIHYLMHVKSNH----GDDETFVRSQYERAVKACGLEFRSDKLWDAYIRWENESKRYHRVVQ 507
            ||||:||:..::.|.    |:.|:.:|:.||.||.|||.:||||:||:|||.||.|..:...|..
Zfish   234 VDLWLHYITFLRENQDTSDGEAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTA 298

  Fly   508 IYDRLLAIPTQGYNGHFDNFQDLINQHDVTITLANEEVIRLRKDFHERQQSKSSKSSSKHRRDSS 572
            ||||||.||||.|:.||..|:|.:..::....|:.||.:.||.:.                .:::
Zfish   299 IYDRLLCIPTQLYSQHFQKFKDHVQSNNPKHFLSEEEFVSLRVEL----------------ANAN 347

  Fly   573 SSSKDKDSKEREREKDKDKDKDKDKEKRETVGGGVGKSPKDTSETQVDESDSTTDLTTESESSHA 637
            ..|.|:|:                    ||...|....|            .|.||         
Zfish   348 KPSGDEDA--------------------ETEAPGEELPP------------GTEDL--------- 371

  Fly   638 ASKPAMQIDFSDLSTLNDEEVVSIRDRAISARRKVHKLTVSAVTARWSFEEGIKRPYFHVKPLER 702
             ..||.::          .|:.::|.:.|..|:::.......|:.||:|||||||||||||.||:
Zfish   372 -PDPAKRV----------TEIENMRHKVIETRQEMFNHNEHEVSKRWAFEEGIKRPYFHVKALEK 425

  Fly   703 AQLKNWKDYLDFEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVRDVYR 767
            .||.||::|||||:|.|..|||:|||||||||||||:|||:|..:||||...::     ||.:|:
Zfish   426 TQLNNWREYLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLESYSTEA-----VRHIYK 485

  Fly   768 RACRIHHPDKPSLHLMWAAFEECQMNFDDAAEILQRIDQRCPNLLQLSYRRINVERRRGALDKCR 832
            :||.:|.|.||::||:||||||.|.:.|:|..||:.::...|.|..:..||:::|||.|.:::..
Zfish   486 KACTVHLPKKPNVHLLWAAFEEQQGSIDEARSILKAVEVSVPGLAMVRLRRVSLERRHGNMEEAE 550

  Fly   833 ELYKHYIESTKNKGIAGSLAIKYARFLNKICHDLDAGLAALQQALERDPANTRVALQMIDL---- 893
            .|.:..|.:.:|...:...::|.||.|.|:...:......|.:|:|:|..|.::.|.:::|    
Zfish   551 ALLQDAITNGRNSSESSFYSVKLARQLVKVQKSIGRAKKVLLEAVEKDETNPKLYLNLLELEYSG 615

  Fly   894 CLQRPKVDEQEVVEIMDKFMARADIEPDQKVLFAQRKVEFLEDFGSTARGLQDAQRALQQALTKA 958
            .:|:   :|.|::...|:.:: :.:..:.::.|:||||:|||||||....|..|....|:.|.:.
Zfish   616 DVQQ---NEAEIIACFDRALS-SSMALESRITFSQRKVDFLEDFGSDINTLMAAYEQHQRLLAEQ 676

  Fly   959 KEAQKKSD-GS--PSRKNSSSSKEGPVPTGSAAAAYNNGGSAAAVAGYNYGAANPYYGQQNTAAA 1020
            :..::|:: ||  |..|...:..:. |.:|.......|.      |||||   |.:|        
Zfish   677 ESFKRKAENGSEEPDAKRQRTDDQS-VASGQMMDMQANH------AGYNY---NNWY-------- 723

  Fly  1021 YPSQTPQQASYDSYYNQWGYGSGGASANSGGSGYNYGQWSGYGNYY 1066
                         .||.||      |.||.|   .|||:..|..||
Zfish   724 -------------QYNSWG------SQNSWG---QYGQYGQYNQYY 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp39NP_733256.2 PHA03169 11..>269 CDD:223003 16/80 (20%)
RNA14 359..>535 CDD:227438 87/180 (48%)
Spy 755..>962 CDD:443119 65/210 (31%)
TPR repeat 884..915 CDD:276808 6/34 (18%)
prpf39NP_001004520.1 TPR repeat 530..557 CDD:276809 7/26 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 678..703 5/25 (20%)
HAT 6 700..731 14/67 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..148 34/173 (20%)
RNA14 148..>495 CDD:227438 168/419 (40%)
HAT 1 180..212 18/31 (58%)
HAT 2 214..246 16/31 (52%)
HAT 3 254..289 20/34 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 347..374 10/68 (15%)
LapB <408..598 CDD:442196 91/194 (47%)
HAT 4 408..440 24/31 (77%)
HAT 5 442..474 23/31 (74%)
TPR repeat 495..524 CDD:276809 15/28 (54%)

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