DRSC/TRiP Functional Genomics Resources

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Protein Alignment wdn and CG5245

DIOPT Version :9

Sequence 1:NP_476900.1 Gene:wdn / 43398 FlyBaseID:FBgn0005642 Length:869 Species:Drosophila melanogaster
Sequence 2:NP_650197.1 Gene:CG5245 / 41530 FlyBaseID:FBgn0038047 Length:501 Species:Drosophila melanogaster


Alignment Length:463 Identity:117/463 - (25%)
Similarity:180/463 - (38%) Gaps:140/463 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 KEEPPEEKHPPEQVVTKVEVCESELLPPSFTIFQQAKSAESVADAASMPPPAASETKPLEVDPAP 267
            |:|||:|           :..|.||:..|.:.|::.:|...:.:..|.    ..:.:|::..|:.
  Fly    12 KDEPPQE-----------DTFEEELIFISNSDFEELESEIKIENFCSY----GKDLEPVKGVPSK 61

  Fly   268 LHKCLDCNGLLLETPDEVAKHEAAAHRLRLTYRCSECQREFELLAGLKKHLKTHRTE-------- 324
            |..|          ..::|| :....:...|::|::||:.|.....|:.||:.|..|        
  Fly    62 LKTC----------KSKIAK-KRPLRKQTDTFKCTQCQKTFTRKENLESHLRLHAEERPFECSHC 115

  Fly   325 ----GRKDTWK-----------KCPDCGKCL-KLGSMWMHRKIHSDNKKYQCDICGQKFVQKINL 373
                ||:..:|           ||..|.|.. :..|:..|...|:..:.::|..|...|.:|.:|
  Fly   116 SKSFGRRTHYKRHLLKHEKRPHKCSHCSKTFTQNSSLKQHLHEHTGERPFKCTQCSTSFARKSHL 180

  Fly   374 THHARIHSSEKPYECPECQKRFQERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLE 438
            ..|.|.||.|:|:||..|:|.|:..||||.|.:.|.:.|.::|..|.|.:|....|:.|.|.|.|
  Fly   181 QVHLRTHSEERPFECTHCEKAFKNNSHLQEHLRTHQEARPFKCSHCSKSFKLRSILQKHLLTHAE 245

  Fly   439 QRPFACTVCDKSFISNSKLKQHSNIHTGMRPFKCNYCPRDFTNFPNW------------LK---- 487
             |.|.||.|.|:|:.|..|:.|..:|.|..||||.:|...|......            ||    
  Fly   246 -RSFKCTQCPKTFLQNDSLQIHLRVHAGEDPFKCPHCSETFARNSRLQLHLLEHAGKEPLKCSQC 309

  Fly   488 ----------------HTRRR---------------HKVDHK---TGE----------------H 502
                            |||.|               |.|:|:   |||                |
  Fly   310 SATFAMRSLYRVHVRLHTRERQYKCAECSKSFFKKSHLVEHQQVHTGERPFKCTHCFKDFKCRTH 374

  Fly   503 L---------ENIP--SYCSK------------KSTTNKAQKAAAAAAAAAAASSAVNPNELSAS 544
            |         |.:|  |||||            :..|.|.|......:.:...||.::.:..:.:
  Fly   375 LRVHMLDHIGEKVPKCSYCSKEFKLSSQLLVHLQEHTGKNQFECPHCSKSYTTSSTLHMHLRTHT 439

  Fly   545 SELKAKAN 552
            .||..|.:
  Fly   440 GELPFKCS 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdnNP_476900.1 C2H2 Zn finger 301..321 CDD:275368 7/19 (37%)
RPB9 333..425 CDD:224510 32/92 (35%)
C2H2 Zn finger 333..352 CDD:275368 5/19 (26%)
zf-H2C2_2 344..369 CDD:290200 6/24 (25%)
zf-C2H2 358..380 CDD:278523 7/21 (33%)
C2H2 Zn finger 360..380 CDD:275368 7/19 (37%)
zf-H2C2_2 372..395 CDD:290200 11/22 (50%)
zf-C2H2 386..408 CDD:278523 10/21 (48%)
C2H2 Zn finger 388..436 CDD:275368 18/47 (38%)
zf-H2C2_2 400..425 CDD:290200 9/24 (38%)
C2H2 Zn finger 416..433 CDD:275368 5/16 (31%)
zf-H2C2_2 429..453 CDD:290200 12/23 (52%)
C2H2 Zn finger 444..464 CDD:275368 8/19 (42%)
zf-H2C2_2 457..481 CDD:290200 10/23 (43%)
C2H2 Zn finger 472..493 CDD:275368 9/67 (13%)
CG5245NP_650197.1 COG5048 74..478 CDD:227381 99/375 (26%)
C2H2 Zn finger 84..104 CDD:275368 7/19 (37%)
C2H2 Zn finger 112..132 CDD:275368 3/19 (16%)
C2H2 Zn finger 139..159 CDD:275368 5/19 (26%)
C2H2 Zn finger 167..187 CDD:275368 7/19 (37%)
zf-H2C2_2 179..204 CDD:290200 12/24 (50%)
C2H2 Zn finger 195..215 CDD:275368 9/19 (47%)
C2H2 Zn finger 223..243 CDD:275368 7/19 (37%)
C2H2 Zn finger 250..270 CDD:275368 8/19 (42%)
C2H2 Zn finger 278..298 CDD:275368 3/19 (16%)
C2H2 Zn finger 306..326 CDD:275368 0/19 (0%)
C2H2 Zn finger 334..354 CDD:275368 3/19 (16%)
C2H2 Zn finger 362..382 CDD:275368 2/19 (11%)
C2H2 Zn finger 390..410 CDD:275368 5/19 (26%)
C2H2 Zn finger 418..438 CDD:275368 2/19 (11%)
C2H2 Zn finger 446..466 CDD:275368 0/2 (0%)
C2H2 Zn finger 474..492 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24377
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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