DRSC/TRiP Functional Genomics Resources

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Protein Alignment wdn and CG4820

DIOPT Version :9

Sequence 1:NP_476900.1 Gene:wdn / 43398 FlyBaseID:FBgn0005642 Length:869 Species:Drosophila melanogaster
Sequence 2:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster


Alignment Length:298 Identity:70/298 - (23%)
Similarity:108/298 - (36%) Gaps:89/298 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 ASMPPP-------AASETK------PLEVDP-AP-----LHKCLDCNGL----LLETPDEV--AK 287
            |:.|.|       :||:.|      .:|.|| ||     |.:.|.....    :|..|::.  |:
  Fly    99 AAAPDPLGIDELMSASDIKIEPIQLQMEEDPQAPYPENQLEQALSYGNAPGEDILPLPEDYGEAQ 163

  Fly   288 HEAAAHRLRLTYRCSECQREFELLAGLKKHLKTHRTEGRKDTWKKCPDCGKCLKLGSMWMHRKIH 352
            .|.|      |......||..:..|.:|.  |.|                 .:::|...:|.|:.
  Fly   164 TEVA------TTTNEPAQRRSKNTAKIKS--KKH-----------------TMRVGRKLIHVKVI 203

  Fly   353 SDNKKYQCDICGQKFVQKINLTHHARIHSSEKPYECPECQKRFQERSHLQRHQKYHAQTRSYRCE 417
            .|.:.       ::.|.        |...|.||..|..|.::|::.|:|..|...|..|:.:.|:
  Fly   204 DDKQP-------KRIVD--------RNGPSAKPCICEHCGRQFKDTSNLHVHLLRHTGTKPFECD 253

  Fly   418 KCGKMYKTERCLKVHNLVHLEQRPFACTVCDKSFISNSKLKQHSN---------------IHTGM 467
            :|.:...|...|:.|.|.|.| .|:|||.|...:.:||...:|..               |..|.
  Fly   254 QCHQKCYTLHLLRRHQLKHTE-GPYACTFCGLEYSTNSSRVRHEREACKKGRAPQSKWEIIKKGE 317

  Fly   468 RPFKCNYCPRDFTNFPNWLKHTRRRHKVDHKTGEHLEN 505
            |.|.|..|...|....|:.:|.        .:..|:||
  Fly   318 RTFHCEVCDLWFLRAGNFTQHI--------NSSSHIEN 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdnNP_476900.1 C2H2 Zn finger 301..321 CDD:275368 5/19 (26%)
RPB9 333..425 CDD:224510 19/91 (21%)
C2H2 Zn finger 333..352 CDD:275368 3/18 (17%)
zf-H2C2_2 344..369 CDD:290200 3/24 (13%)
zf-C2H2 358..380 CDD:278523 2/21 (10%)
C2H2 Zn finger 360..380 CDD:275368 2/19 (11%)
zf-H2C2_2 372..395 CDD:290200 6/22 (27%)
zf-C2H2 386..408 CDD:278523 6/21 (29%)
C2H2 Zn finger 388..436 CDD:275368 14/47 (30%)
zf-H2C2_2 400..425 CDD:290200 6/24 (25%)
C2H2 Zn finger 416..433 CDD:275368 4/16 (25%)
zf-H2C2_2 429..453 CDD:290200 10/23 (43%)
C2H2 Zn finger 444..464 CDD:275368 6/34 (18%)
zf-H2C2_2 457..481 CDD:290200 8/38 (21%)
C2H2 Zn finger 472..493 CDD:275368 5/20 (25%)
CG4820NP_001097748.1 zf-AD 4..75 CDD:285071
C2H2 Zn finger 224..244 CDD:275368 6/19 (32%)
C2H2 Zn finger 252..272 CDD:275368 6/19 (32%)
C2H2 Zn finger 279..297 CDD:275368 6/17 (35%)
C2H2 Zn finger 322..339 CDD:275368 4/16 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457197
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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