DRSC/TRiP Functional Genomics Resources

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Protein Alignment wdn and CG4820

DIOPT Version :10

Sequence 1:NP_476900.1 Gene:wdn / 43398 FlyBaseID:FBgn0005642 Length:869 Species:Drosophila melanogaster
Sequence 2:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster


Alignment Length:298 Identity:70/298 - (23%)
Similarity:108/298 - (36%) Gaps:89/298 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 ASMPPP-------AASETK------PLEVDP-AP-----LHKCLDCNGL----LLETPDEV--AK 287
            |:.|.|       :||:.|      .:|.|| ||     |.:.|.....    :|..|::.  |:
  Fly    99 AAAPDPLGIDELMSASDIKIEPIQLQMEEDPQAPYPENQLEQALSYGNAPGEDILPLPEDYGEAQ 163

  Fly   288 HEAAAHRLRLTYRCSECQREFELLAGLKKHLKTHRTEGRKDTWKKCPDCGKCLKLGSMWMHRKIH 352
            .|.|      |......||..:..|.:|.  |.|                 .:::|...:|.|:.
  Fly   164 TEVA------TTTNEPAQRRSKNTAKIKS--KKH-----------------TMRVGRKLIHVKVI 203

  Fly   353 SDNKKYQCDICGQKFVQKINLTHHARIHSSEKPYECPECQKRFQERSHLQRHQKYHAQTRSYRCE 417
            .|.:.       ::.|.        |...|.||..|..|.::|::.|:|..|...|..|:.:.|:
  Fly   204 DDKQP-------KRIVD--------RNGPSAKPCICEHCGRQFKDTSNLHVHLLRHTGTKPFECD 253

  Fly   418 KCGKMYKTERCLKVHNLVHLEQRPFACTVCDKSFISNSKLKQHSN---------------IHTGM 467
            :|.:...|...|:.|.|.|.| .|:|||.|...:.:||...:|..               |..|.
  Fly   254 QCHQKCYTLHLLRRHQLKHTE-GPYACTFCGLEYSTNSSRVRHEREACKKGRAPQSKWEIIKKGE 317

  Fly   468 RPFKCNYCPRDFTNFPNWLKHTRRRHKVDHKTGEHLEN 505
            |.|.|..|...|....|:.:|.        .:..|:||
  Fly   318 RTFHCEVCDLWFLRAGNFTQHI--------NSSSHIEN 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdnNP_476900.1 zf-C2HE <279..321 CDD:465082 11/43 (26%)
C2H2 Zn finger 301..321 CDD:275368 5/19 (26%)
C2H2 Zn finger 333..352 CDD:275368 3/18 (17%)
zf-C2H2 358..380 CDD:395048 2/21 (10%)
C2H2 Zn finger 360..380 CDD:275368 2/19 (11%)
zf-H2C2_2 376..395 CDD:463886 6/18 (33%)
zf-C2H2 386..408 CDD:395048 6/21 (29%)
C2H2 Zn finger 388..436 CDD:275368 14/47 (30%)
zf-H2C2_2 400..425 CDD:463886 6/24 (25%)
C2H2 Zn finger 416..433 CDD:275368 4/16 (25%)
SUF4-like 440..>507 CDD:411020 20/81 (25%)
C2H2 Zn finger 444..465 CDD:411020 7/35 (20%)
C2H2 Zn finger 444..464 CDD:275368 6/34 (18%)
zf-H2C2_2 457..481 CDD:463886 8/38 (21%)
C2H2 Zn finger 472..493 CDD:411020 5/20 (25%)
C2H2 Zn finger 472..493 CDD:275368 5/20 (25%)
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262
SUF4-like 224..>279 CDD:411020 17/55 (31%)
C2H2 Zn finger 224..244 CDD:411020 6/19 (32%)
C2H2 Zn finger 224..244 CDD:275368 6/19 (32%)
C2H2 Zn finger 252..272 CDD:275368 6/19 (32%)
C2H2 Zn finger 279..297 CDD:275368 6/17 (35%)
C2H2 Zn finger 322..339 CDD:275368 4/16 (25%)
Blue background indicates that the domain is not in the aligned region.

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